Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01818 ATGGAAGTCCCCAAATCCCCTTCCAAATATAAACGAATCGCCAACCACAAATGGCTCATAAAATTAGGTTTAGTCGTTTTGGTAATGCTGCTATTGTTTTTGGGGTTTTATCTCGAGTCAGATACCGCAAAATTCAATCCGTCTTCGTATTACACTGTGGTTGTGGATTGTGGAAGCACTGGAACACGTGTGAATGTCTATGAGTGGATGGTAGGGTTAGGGGGGATAAGCAAAGGGAACTTGCCAGTGTTGTTGCACTCTTATCCTGATAATGCAACCAAGAGTTCCCTTTGGAAAAATTCTTGTCAATACCACTGTATGCAAACTGAACCCGGGTTACAAAACTTTGTTAATGATTCTTTAGGAGTGAGACAGGCATTGGAGCCTTTGATTGTGTGGGCAGAACATCTTGTGCCGCGCGAAATGCGCAGTGACACTCCTGTTTTTGTCTTGGCCACTGCTGGGTTGAGGAGGCTCCCCAGGGAGGATGCTGACCGGGTGTTGGAAGATGTTGAGGCTGTTGTGAAGGATCACTCCCTTATGTTTAACAAGAGCTGGATAAGGGTTTTGAGTGGGAGGGAGGAAGCTTATTATGGTTGGGTGGCTTTGAACTACAAAATGGGAAGCTTTGATGGCTATCCTGAGTCTCCCACTTTGGGACTTGTTGATTTGGGTGGCTCGTCGTTGCAGGTTGTGGTTGAGATAGATGGTTCCGGGGATGATGTGCATGTGATGCGATCGAAGCTCAGTTCAATGGAACATCGGATTATGGCATACTCATTGCCAGCATTTGGCTTAAATGAAGCATTTGATAGGACAGTTCTTATGCTCAGAAGTAATCAAACTGCAGATATCTCTGAGCTTAGACATCCTTGTTTGGTATCAAATTTTTTACAAAACTATACATGCCATTCTTGCTCTGGATTGACTTCTATTTATCAGAAAAATCACAGCGAACCCCAGGAAAGTGAACTTTATTCTTTACGTCTTACTGGAGAACCTGATTGGGAGCAGTGCAAAAAACTAGCTATTGCTGCTGCTATGAACATGAGCGATTCGGAAGTGTCACATCTGACAGTTAGCAAAAATTGCCAAGCTAGTTCATTTTCTGGTATTGGCACTGGAATACTTAATTTAACAGCTGTTGCACACCCAATCAAGTTTCATGCTTTATCTGGCTTCTTTTTAGTCTACAACAAGCTAAATTTGAGCCAAAGAGCCAACTTAACAATGGTTTGGGAGTCTGGCAAGCAAATATGTTCAAATTTGTGGTCTGGCTTGAGCAGTGTTTCTGACAATCCAAATTATGCTGGACAATTTTGTTTCCGGGTGGCTTATATGGCATCATTGATTGAATATGGTCTGTGTCTTGGTGATGTTGAAATGGTATTTGGTCCAGGTGACATTTCATGGACCTTAGGAGCTGCATTAATTGAAGGGAAATTTCCGTGGTTAAATAGTGCAAGCCACAAAGCTCATGTTATTATTTCAACTTTAAGGAATGTCAAGTTAGTTCTTGCAGTGAAGGAAAAGCTTGAAAATGAACACCATAACCTCCCTGTTGGCCCAAATGGAAGGGATGACGAAGATATGATACTGTGGTTTCTCAAAGATCGCAAGTTTTCTGTTGAAGATGCTATTTCCAAGTTGACTAAAGCCATTAAATGGCGTCAAGATTTTGGGGTGTCTAAATTGACTGAAGAAGCCGTTAGAGATGTTGCTCAAACTGGAAAAGCATATGTACATGACTTTCTAGATGTCAATAGCAGACCTGTGCTTATGGTGGTTGCATCAAAGCATTTTCCAGATGCACAGGACCCTGCAGATGATGAGAGGCTGTGTGTTTTCTTAATTGAGAAGGCGTTGAGTAAGCTTCCAACTGGGAAAGAACAAATACTTGGAATAGTTGATCTCAGAGGTTTTGGTACAAAAAATACTGATCTTAAATTCTTGACATTCTTGTTTGATGTATTCTATTGTTACTATCCCAAGCGATTGTCTGAAGTACTATTTGTGGATGCACCTTTTGTGTTTAAGCCAATTTGGCAGCTAGTCAAGCCCTTGTTAAAATCATATGCTTCTCTGGTGAGGTTTTGCTCTGCAGAGACTGTTAGGAAGGAATATTTTACAAACGAAACATTGCCACCATGCTTCAGAGATTGA 2163 0.4152 MEVPKSPSKYKRIANHKWLIKLGLVVLVMLLLFLGFYLESDTAKFNPSSYYTVVVDCGSTGTRVNVYEWMVGLGGISKGNLPVLLHSYPDNATKSSLWKNSCQYHCMQTEPGLQNFVNDSLGVRQALEPLIVWAEHLVPREMRSDTPVFVLATAGLRRLPREDADRVLEDVEAVVKDHSLMFNKSWIRVLSGREEAYYGWVALNYKMGSFDGYPESPTLGLVDLGGSSLQVVVEIDGSGDDVHVMRSKLSSMEHRIMAYSLPAFGLNEAFDRTVLMLRSNQTADISELRHPCLVSNFLQNYTCHSCSGLTSIYQKNHSEPQESELYSLRLTGEPDWEQCKKLAIAAAMNMSDSEVSHLTVSKNCQASSFSGIGTGILNLTAVAHPIKFHALSGFFLVYNKLNLSQRANLTMVWESGKQICSNLWSGLSSVSDNPNYAGQFCFRVAYMASLIEYGLCLGDVEMVFGPGDISWTLGAALIEGKFPWLNSASHKAHVIISTLRNVKLVLAVKEKLENEHHNLPVGPNGRDDEDMILWFLKDRKFSVEDAISKLTKAIKWRQDFGVSKLTEEAVRDVAQTGKAYVHDFLDVNSRPVLMVVASKHFPDAQDPADDERLCVFLIEKALSKLPTGKEQILGIVDLRGFGTKNTDLKFLTFLFDVFYCYYPKRLSEVLFVDAPFVFKPIWQLVKPLLKSYASLVRFCSAETVRKEYFTNETLPPCFRD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01818 720 Gene3D - 39 190 - -
Cca11g01818 720 Gene3D - 484 718 IPR036865 -
Cca11g01818 720 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 569 720 IPR001251 -
Cca11g01818 720 SMART sec14_4 573 718 IPR001251 -
Cca11g01818 720 Pfam GDA1/CD39 (nucleoside phosphatase) family 48 478 IPR000407 GO:0016787
Cca11g01818 720 SUPERFAMILY CRAL/TRIO domain 568 708 IPR036865 -
Cca11g01818 720 SUPERFAMILY CRAL/TRIO N-terminal domain 503 568 IPR036273 -
Cca11g01818 720 CDD NBD_sugar-kinase_HSP70_actin 53 267 - -
Cca11g01818 720 PANTHER GDA1/CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN 4 506 - -
Cca11g01818 720 Gene3D Exopolyphosphatase. Domain 2 191 463 - -
Cca11g01818 720 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 4 506 IPR000407 GO:0016787
Cca11g01818 720 Pfam CRAL/TRIO domain 575 714 IPR001251 -
Cca11g01818 720 CDD SEC14 571 691 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01818 Cca-Chr11 43181704 43191390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01818 19 479 Nodulin-like Gene Family AT4G19180 34.382 1.64e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01818 - - gmx:100775757 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01818 11 43181704 43191390 Cca11g01818 11 43181704 43191390 ECH