Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01815 ATGCCTGTAAATCCATGGACCCTCTTCTTATGCATTTCCCTTCTACTTCCACTCCATTCTTTCATAGCTGCAGCAGTGAACCAACAAGGGGAGGCTCTTCTTTCATGGAAGAGAACCCTGAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAATTGAAGACACCCCATGTAGCTGGTATGGAGTGAGTTGCAATACCAAGAACGAAGTAGAACAATTGGATCTGAGGTATGTAGATTTGCTTGGAAGACTTCCCTCTAATTTCACCTCATTGCTTTCCTTAACCAGTCTGATCTTAACCGGAACCAACCTCACGGGTTCAATCCCTAAAGAACTAGGAGTCCTCAGTGAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAATGGAGAAATCCCAAGTGAGGTCTGTTACTTGCCCAAACTAGAGGAACTCCATCTCAACTCCAACGATCTCGTGGGGTCCATTCCAGTTGCAATTGGGAACCTCACCAAGTTGGAGAAGTTGATCCTCTATGACAATCAACTCAGTGGTGAAGTTCCAAGCACCATCGGCAACCTTAAGAACCTTCAAGTAATAAGAGCAGGAGGAAACAAGAACCTGGAAGGTCCTCTCCCACAGGAAATTGGCAACTGTTCCAATTTGGTTATGTTGGGTCTCGCTGAAACGAGCCTCTCAGGTTCTCTCCCACCAACTCTTGGCCTTTTAAAGAACCTTGATACCATTGCCATTTACACTTCCTTACTCTCCGGTGAGATACCACCTGAACTTGGTGACTGCACGGGGCTCCAAAACATTTATCTTTATGAAAACTCCCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTCAAGAACCTCCAAAACCTTCTGTTATGGCAGAACAACTTGGTTGGCATCATCCCACCAGAGATTGGTAACTGCCAACAGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATCCCAAAAACTTTCGGGAACCTGACATCACTGCAAGAGCTCCAACTCAGTGTGAACCAGATTTCAGGGGAGATTCCTGCAGAACTGGGGAAGTGTCAGCAACTCACGCATGTAGAGCTTGACAACAATCTCATCGCGGGTACCATACCTTCCGAATTGGGAAACCTAAGGAATCTAACACTGTTGTTCCTATGGCACAACAAGCTGCAAGGTAGCATTCCCTCTTCGCTTTCCAATTGTCACAACCTAGAGGCCATTGATCTGTCGCAGAATGGATTAACTGGTCCCATACCCAAGGGGATATTCCAACTCAAGAATCTCAACAAGCTCTTGCTCCTCTCCAACAATCTCTCGGGGAAAATTCCCTCTCAGATTGGGAATTGTTCCTCTCTTATCCGATTTCGAGCCAACGACAACAACATCACCGGGAACATTCCATCAGAGATTGGGAATCTCAACAATTTGAATTTTCTCGACCTCGGGAACAATCGGATTTCCGGCGTCATCCCGGAGGAGATCTCCGGTTGCCGGAATCTCGCTTTTCTTGACATACACTCAAACTTCATCGCCGGGTATTTGCCGGAAAGTTTGAGCCGGCTTAATTCGCTTCAGTTTCTCGATGTCTCCAATAACATGATCGAAGGTGCACTAAACCCTAACCTGGGTTTACTCGCGGCACTCTCCAAGCTTGTTCTCGCGAAGAATCGAATCTCCGGCTCAATCCCGAGTCAACTCGGTTCATGCGCCAAGCTTCAATTGCTGGACCTCAGCAGCAACAATTTTTCCGGCGAAATCCCCGGCAGCATCGGCAACATTCCGGCGCTGGAAATCGCTCTGAATCTGAGCCTGAACCAGCTCTCCGGTGAGATCCCTCAGGAGTTTTCCGGTTTGACGAAGCTCGGAGTGTTGGACATATCTCACAACGTTCTCAGCGGAAACCTGCAATCTCTCGCGGTCTTGCAAAATCTCGTGGTGTTAAACATCTCGCACAACAAATTCTCGGGACGCGTACCGGACACGCCTTTCTTCGCGAAGCTTCCGTTGAGCGTGATGGCGGGAAACCCGGCGCTGTGCTTCTCCGGCAACGAGTGCGGGGGCGGCGACAGCGGCGGGAGGTCGGGGCGGCGGGCGAGGGTGGCGCGCGTGGCGATGGTGGTCCTGCTGTGCACAGCATGCGTGCTGCTGATGGCGGCGCTGTACGTGGTGGTCGCAGCGAAACGACGAGGGGACCGCGAAAACGACGTGGAGCGTGACGGAAAAGACAGCGACGCGGACATGGCCCCACCCTGGGAAGTGACGCTGTACCAGAAACTCGATCTGTCTATCTCCGACGTAGCGAAATGTCTCTCCGCTGGCAACGTCATTGGCCACGGTCGATCCGGCGTCGTTTACAGGGTGAACATGCCGTCGACGGGGCTCGCCATCGCGGTCAAGAAGTTCCGCTCGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCGACGCTGGCGCGGATCCGGCACCGCAACATCGTGCGGCTGCTCGGCTGGGGTGCCAACCGGAGAACCAAGTTACTGTTTTACGATTATTTACCGAACGGTAATTTGGATTCGCTGTTACACGAGGGGTGCACAGGATTAATTGATTGGGAGACGCGGCTCAAGATAGCACTGGGCGTAGCCGAGGGCGTCGCCTACTTGCACCATGATTGCCTCCCTGCTATCTTGCACCGGGACGTTAAAGCGCTCAATATTTTGTTAGGAGACACATATGAACCCTGTTTGGCTGATTTTGGGTTCGCTCGCTTCGTCGAAGAGGATCACGCTTCCTTTTCCGTTAATCCACAGTTCGCAGGCTCCTACGGCTACATTGCTCCCGAGTATGCTTGCATGCTTAAAATCACAGAGAAGAGTGATGTGTACAGCTTTGGAGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGACAACATGTTATTCAGTGGGTCAGGGAGCATCTAAAGAGCAAGAAGGACCCCATTGAGGTTCTTGATTCCAAGCTACAAGGCCATCCAGACACACAAATACAAGAGATGCTGCAAGCACTTGGTATCGCTCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCCACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCATGATCCTCCACCAGGGGCTGAGCCCCACAAGCCAAAACCCAAAGTAACGGAAGCTTCGTCCTATTCTTCGTCCTCAGTGACCCCTTCTCAGTTGTTGCTCCTACAATCTAGTTCCCATTCCTCATCACTTGCTTATTCCTCTTCCTCAGCAGCAGGCTACCACCCTCCAAGGAACCAATCCTCAATTCAACATTAA 3354 0.5078 MPVNPWTLFLCISLLLPLHSFIAAAVNQQGEALLSWKRTLNGSLEVLSNWDPIEDTPCSWYGVSCNTKNEVEQLDLRYVDLLGRLPSNFTSLLSLTSLILTGTNLTGSIPKELGVLSELSYLDLSDNALNGEIPSEVCYLPKLEELHLNSNDLVGSIPVAIGNLTKLEKLILYDNQLSGEVPSTIGNLKNLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSLSGSLPPTLGLLKNLDTIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLQNLLLWQNNLVGIIPPEIGNCQQLSVIDVSMNSLTGSIPKTFGNLTSLQELQLSVNQISGEIPAELGKCQQLTHVELDNNLIAGTIPSELGNLRNLTLLFLWHNKLQGSIPSSLSNCHNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGNIPSEIGNLNNLNFLDLGNNRISGVIPEEISGCRNLAFLDIHSNFIAGYLPESLSRLNSLQFLDVSNNMIEGALNPNLGLLAALSKLVLAKNRISGSIPSQLGSCAKLQLLDLSSNNFSGEIPGSIGNIPALEIALNLSLNQLSGEIPQEFSGLTKLGVLDISHNVLSGNLQSLAVLQNLVVLNISHNKFSGRVPDTPFFAKLPLSVMAGNPALCFSGNECGGGDSGGRSGRRARVARVAMVVLLCTACVLLMAALYVVVAAKRRGDRENDVERDGKDSDADMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVNMPSTGLAIAVKKFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDSLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCLPAILHRDVKALNILLGDTYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPKVTEASSYSSSSVTPSQLLLLQSSSHSSSLAYSSSSAAGYHPPRNQSSIQH 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01815 1117 Gene3D Ribonuclease Inhibitor 217 326 IPR032675 -
Cca11g01815 1117 Gene3D Transferase(Phosphotransferase) domain 1 851 1058 - -
Cca11g01815 1117 SUPERFAMILY L domain-like 44 370 - -
Cca11g01815 1117 MobiDBLite consensus disorder prediction 1096 1117 - -
Cca11g01815 1117 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01815 1117 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Cca11g01815 1117 SMART LRR_sd22_2 405 434 - -
Cca11g01815 1117 SMART LRR_sd22_2 116 148 - -
Cca11g01815 1117 SMART LRR_sd22_2 622 641 - -
Cca11g01815 1117 SMART LRR_sd22_2 477 500 - -
Cca11g01815 1117 SMART LRR_sd22_2 261 287 - -
Cca11g01815 1117 SMART LRR_sd22_2 164 190 - -
Cca11g01815 1117 SMART LRR_sd22_2 525 540 - -
Cca11g01815 1117 SMART LRR_sd22_2 381 404 - -
Cca11g01815 1117 MobiDBLite consensus disorder prediction 1052 1067 - -
Cca11g01815 1117 Gene3D Ribonuclease Inhibitor 327 425 IPR032675 -
Cca11g01815 1117 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cca11g01815 1117 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Cca11g01815 1117 Pfam Leucine rich repeat 479 538 IPR001611 GO:0005515
Cca11g01815 1117 SMART LRR_typ_2 164 188 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 381 405 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 525 544 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 549 573 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 116 140 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 477 501 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 645 669 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 429 453 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 333 357 IPR003591 -
Cca11g01815 1117 SMART LRR_typ_2 285 309 IPR003591 -
Cca11g01815 1117 SUPERFAMILY Protein kinase-like (PK-like) 763 1050 IPR011009 -
Cca11g01815 1117 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01815 1117 PANTHER OS01G0170300 PROTEIN 7 1069 - -
Cca11g01815 1117 Gene3D Phosphorylase Kinase; domain 1 753 850 - -
Cca11g01815 1117 SUPERFAMILY RNI-like 266 647 - -
Cca11g01815 1117 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01815 1117 MobiDBLite consensus disorder prediction 1052 1081 - -
Cca11g01815 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Cca11g01815 1117 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Cca11g01815 1117 Gene3D Ribonuclease Inhibitor 139 216 IPR032675 -
Cca11g01815 1117 Gene3D Ribonuclease Inhibitor 426 691 IPR032675 -
Cca11g01815 1117 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01815 Cca-Chr11 43134979 43139829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01815 25 1103 Receptor kinase-like Gene Family AT5G56040 54.871 0.0 1131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca11g01815 Pkinase 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01815 - - gmx:100778064 1835.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01815 11 43134979 43139829 Cca11g01815 11 43134979 43139829 ECH