Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01808 ATGGCCTCATCCAGCTCCTACAATTCTCCCTGTGCTGCCTGCAAATTCCTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCCGAAGAGCCTCAAAAATTCGCAAACGTCCACAAAATTTTCGGTGCTAGCAATGTGACCAAACTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAAGCAGAGGCACGTGTGAGGGACCCAGTTTACGGCTGTGTTGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAGAAGGAGCTCGATGCTGCAAACGCTGATCTGCTACGCTATTCCTACACTGACATCTCTCCAGTATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACAAGTGCCCCAAAGGCAATTTACTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCAATCTACCACCACTGCTTATACTTTTCCTTACGCTCTTCCCTGGACTGATTCCTCTTCGGAGGACATTAGTGAGGGAGGAGGAGCAGGAGGTAATTTGTGA 561 0.4955 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDISPVSLSVPPGLASFQQVPQRQFTARFGNEASGFYRQSTTTAYTFPYALPWTDSSSEDISEGGGAGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01808 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cca11g01808 186 Coils Coil 89 109 - -
Cca11g01808 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cca11g01808 186 PANTHER ELONGATED PETIOLULE 1 1 184 - -
Cca11g01808 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01808 Cca-Chr11 43004527 43006914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01808 1 186 AS2 family AT5G63090 63.212 1.13e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g01808 LOB 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01808 - - gmx:100803667 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01808 11 43004527 43006914 Cca11g01808 11 43004527 43006914 ECH