Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01805 ATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAATTGAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTCGGAGTTGGATGCTGGAGTTCTGTTCCCAAACTAGCTGGACTTCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAAGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGAAGAACAGATAATGAGATTAAAAACTTCTGGAATTCGTGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTTGCAGAAGCTCATGTAAAGGAAGAAAAGAAAATCACAGAGACATCACCTATGCAAACACCATTATCTCAAGGCCCTTCAGTTCCATTAACCTTTCCTTCATCACAGGGATCAGCATTTCTGATAGATTCCGATTACTATGATGGAGCGCTAACAGAAGCTTCAAGAGAAATTTTCATGACAAAGCCAGCATTGGACCCTTTATCCTACTATGATTTTCCAATGAATGTTGCACAGTGTGGTTTTAATTTACCTGTGAGTCAGTACCACACAGGCCTTAAAGCATCTGATCAGAGCCTCTTTGGGCCCAATTCAAGCTATGGATTCTCTTCAATGCCAAGTCTAACCAATTCTGATCATGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCACTGTTCATGAATGATCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACCATTTACCCTGGAGGAGGGTGTCACATGATGGAAAATGCAGGGTTCTCGTGGGACGGTGACAACAAGTTTGACCCTTTGTTTCAGTTCCAAGTAAATGGCGCAAAATCCGAGGATTTTAAGACGAGTTCATGGGAAGAAGGGCAGCTGCAGACTCACAATTCGATAGATTTCACTAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACTGGAGCAAATTTTGATGTATTCCAGCATATATGA 1101 0.4205 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLAEAHVKEEKKITETSPMQTPLSQGPSVPLTFPSSQGSAFLIDSDYYDGALTEASREIFMTKPALDPLSYYDFPMNVAQCGFNLPVSQYHTGLKASDQSLFGPNSSYGFSSMPSLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYPGGGCHMMENAGFSWDGDNKFDPLFQFQVNGAKSEDFKTSSWEEGQLQTHNSIDFTSFPLTSLSEDLTGANFDVFQHI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01805 366 Gene3D - 11 67 - -
Cca11g01805 366 PANTHER MYB DOMAIN PROTEIN 55 1 362 - -
Cca11g01805 366 CDD SANT 70 109 IPR001005 -
Cca11g01805 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g01805 366 CDD SANT 17 61 IPR001005 -
Cca11g01805 366 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g01805 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g01805 366 SMART sant 13 63 IPR001005 -
Cca11g01805 366 SMART sant 66 114 IPR001005 -
Cca11g01805 366 PANTHER MYB TRANSCRIPTION FACTOR 1 362 - -
Cca11g01805 366 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g01805 366 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca11g01805 366 Gene3D - 69 144 - -
Cca11g01805 366 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca11g01805 366 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01805 Cca-Chr11 42896030 42897874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01805 1 137 MYB Transcription Factor Family AT1G57560 81.022 5.03e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01805 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01805 K09422 - gmx:100811140 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01805 11 42896030 42897874 Cca11g01805 11 42896030 42897874 ECH
Cca11g01805 11 42896030 42897874 Cca03g00426 03 6628178 6630187 PCT