Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01800 ATGAACCCCTACGACAATAGATACTCCGACGCCGCTTCTTTCCGCGGCCGTCGCAGTGATTTCGCTGGATCTATTCCGCCGCCGTCTTTCGTCAGCCGCGGCGGCGCGGTTCCCTATGGAGCACCGTACGGCGTCGCTAGACCCAACGGTTTCGGATCCGCACCCGTTACCCCGGTTCCACCCTTTGTGCCTCCTCCTGGGGGCTTTAGTGTAGGCCGAGGCGGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATATGACGTAggtcgtggcggtggaagaggccgcggtggtggtggtggtggtggtAGCAGCAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGAAGAGGAGGTAGACATGGTGGTGGATCTTCTAGGGACGAGTTGAACAACATTGCACTCCCGAAGCAGGATTTCAGGAATTTAGTCCCTTTTGAGAAGAACTTCTACGTTGAGTGCCATGCGGTGAGGGCCATGTCTGATCAAGAAGTTATGCATTACCGAGCCAGTAGAGAGATCACCGTGCAAGGGCAGGATGTGCCGAAGCCTGTACGCATGTTTCATGAGGCCAATTTTCCTGATTACTGCCTTGAGGTCATTGCCAAACTGGGATTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACAAGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATCCAAGAAGAGGCTCTTAAATTTGGGTCTCGTGCAAATATTAGAAGTACATGTGTTTATGGTGGTGCACCAAAGGGTCCCCAAATTCGCGAGCTTAGAAGAGGTGTTGAGATTGTTATTGCTACACCTGGCCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTCCATAGAGTGACTTACCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAAATACGGAAAATTATAGGCCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTTGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAGTTATTGGATCGCCAGACCTGAAGGCAAATCATTCTATAAATCAAATTGTTGAAGTTATAACAGACATGGAGAAATACAATAGATTAATCAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTTATATTTATGGAGACAAAGAGGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGATGGCCAGCATTGTCCATCCATGGTGATAAAAACCAGTCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTGTTTAGAAGCTTAG 1521 0.4681 MNPYDNRYSDAASFRGRRSDFAGSIPPPSFVSRGGAVPYGAPYGVARPNGFGSAPVTPVPPFVPPPGGFSVGRGGGRVGNGHVSDRKYDVGRGGGRGRGGGGGGGSSRAGAHGFRGSGRGGRHGGGSSRDELNNIALPKQDFRNLVPFEKNFYVECHAVRAMSDQEVMHYRASREITVQGQDVPKPVRMFHEANFPDYCLEVIAKLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAQGDGPIVLVLAPTRELAVQIQEEALKFGSRANIRSTCVYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLHRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLLWSATWPREVETLARQFLRNPYKVVIGSPDLKANHSINQIVEVITDMEKYNRLIRLLKEVMDGSRILIFMETKRGCDQVTRQMRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLGRITVCLEA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01800 506 CDD SF2_C_DEAD 407 497 - -
Cca11g01800 506 Pfam DEAD/DEAH box helicase 212 383 IPR011545 GO:0003676|GO:0005524
Cca11g01800 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 422 506 IPR001650 -
Cca11g01800 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 394 IPR014001 -
Cca11g01800 506 Pfam Helicase conserved C-terminal domain 418 497 IPR001650 -
Cca11g01800 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 497 IPR027417 -
Cca11g01800 506 CDD DEADc_DDX5_DDX17 200 395 - -
Cca11g01800 506 Gene3D - 396 498 IPR027417 -
Cca11g01800 506 SMART ultradead3 207 410 IPR014001 -
Cca11g01800 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 188 216 IPR014014 GO:0003724
Cca11g01800 506 Gene3D - 151 395 IPR027417 -
Cca11g01800 506 MobiDBLite consensus disorder prediction 71 132 - -
Cca11g01800 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 340 348 IPR000629 -
Cca11g01800 506 PANTHER LD32873P 60 497 - -
Cca11g01800 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 396 IPR027417 -
Cca11g01800 506 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g01800 506 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01800 Cca-Chr11 42856665 42860901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01800 175 504 Eukaryotic Initiation Factors Gene Family AT3G19760 33.030 3.96e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01800 K12823 - gmx:100817092 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01800 11 42856665 42860901 Cca11g01800 11 42856665 42860901 ECH