Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01797 ATGGCGCTCGCCATTctcctcctccacctctctctcctcctAACACCCGCACTTGCCGTGGAGTTCCTATTTAACTCCTTCGCCGGCGTCACCAACCTCACTCTCATCAAAGACGCCCGCGTCGACGTCTCCGTCGTCCGCATGACCAACGACTCCAACCAGTACTCCTACGGCCGAGCCTTCTACCCCACCAAGCTCCCCATGAAAACCGCTTCTAATTCCTCACGCATTTCTTCATTCTCCACCTCCTTCGTCTTCTCCATCTTGCCGCAAATCGCAACCAGCCCTGGCTTCGGCCTCGCTTTCCTCCTCTGCAACACCACCTCCCCTCCCGGCGCCCTCGCCAGCCAGTACTTTGGATTATTCACCAACGCCACTTCCCCCTCCGTTTTCCCTCTCCTCGCCGTCGAGTTCGACACCGGCCAGAACCCCGAGTTCAACGACATCGACGACAACCACATCGGCATCGACCTCAACAACATCGAGTCCAAATTCGCAACCACCGCCGGCTACTACAACGCCTCCGGCGCCTTCGTGCCGGTGCGCATGCGCACCGGCCAAAACATCCACGCCTGGATCGACTTCGACGGCGAGAATCTCCAGTTCAACGTAACCATCGCGCCAATCGGCGTTTCGCGCCCGTCGAAGCCTACGCTTACGTATCGCAACCCCGAGATTGCTAACTACGTGTCTTCCGACATGTACGTAGGGTTTTCGGCTTCGAAAACGAACTGGATCGAGGCGCAGAGAGTCCTGGCGTGGAGCTTCAGCGATTCAGGACCGGCGAGGGAGCTGAACACGACGAATTTACCGGTGTTCGAGCTAGAATCGTCGTCTTCCTGGCTTTCAAACGGAGCAATAGCGGGAATCGTTATCGGATGTTTGGCGTTTGTGGTTATATGCGCTTCTGGTTTTTACCTGTGGTGGCGAAAGCAGAAAGGGAGAGAGGAAGAAGACGATGAGATGGAGGATTGGGAGTTGGAGTACTGGCCGCATAGATTTTCGTACGAGGAATTAAGTTTAGCGACGGGTGAGTTCGGGAAGGAGAAATTGCTAGGTTCGGGAGGGTTTGGGAGAGTGTACAGAGGGGTTTTGGCGAACCACACGCAAGTTGCGGTGAAGTGTGTGAACCACGATTCGAAGCAAGGGTTGCGTGAGTTCATGGCGGAGATATCCAGTATGGGGAGGCTGCAGCATAAGAATTTAGTCCAAATGCGAGGGTGGTGTAGAAAGGGGAATGAGCTTATGCTGGTTTATGATTTCATGCCGAATGGGAGTCTGAACAAGTGGGTGTTCGACCGCCCCGAGAAGCTTCTAGGGTGGGAGCAACGGCGTCGTATCCTTGTCGACGTGGCAGAGGGGCTTAACTACCTTCACCACGGTTGGGATCAGGTTGTTATTCATAGGGATATAAAATCCAGCAACATTTTGTTGGACGCCGACATGAGGGGAAGAGTCGGGGATTTCGGTTTGGCCAAGCTTTACACGCACGGGGAGGTTCCCAACACCACACGCGTGGTCGGGACGTTGGGCTACTTGGCGCCGGAGTTGGCCACCATTGCGGCGCCCACTTCGGCCAGTGACGTCTACAGTTTCGGGGTGGTGCTGCTGGAGGTTGCGTGCGGGAGGCGCCCGATAGAGACGTCGGTGGTGGAGGAGGAGGTGGTGCTCATTGATTGGGTGAGGGAGTTGTACGCGAAGGGGTGCGCGCGTGAGGCTGCGGATGCCAGGATTAGTGGGGAGTACGATGAAGGAGATATGGAGATGGTGTTGAAGCTTGGCTTGGCTTGTTGCCACCCTGACCCGCTGAGGAGACCCACCATGAAGGAAGTCGTCGCGGTTCTCCTAGGAGAGAACCCACCGGAGGCCCCCGGAAAAGTTCTCTCCGATTTGGTTCGCTGCGGCGGGGAACCCGATGAGGCGGCGCCTTTGCAACCCTCCGCTCGGGTTTGA 1953 0.5586 MALAILLLHLSLLLTPALAVEFLFNSFAGVTNLTLIKDARVDVSVVRMTNDSNQYSYGRAFYPTKLPMKTASNSSRISSFSTSFVFSILPQIATSPGFGLAFLLCNTTSPPGALASQYFGLFTNATSPSVFPLLAVEFDTGQNPEFNDIDDNHIGIDLNNIESKFATTAGYYNASGAFVPVRMRTGQNIHAWIDFDGENLQFNVTIAPIGVSRPSKPTLTYRNPEIANYVSSDMYVGFSASKTNWIEAQRVLAWSFSDSGPARELNTTNLPVFELESSSSWLSNGAIAGIVIGCLAFVVICASGFYLWWRKQKGREEEDDEMEDWELEYWPHRFSYEELSLATGEFGKEKLLGSGGFGRVYRGVLANHTQVAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDFMPNGSLNKWVFDRPEKLLGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRVGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATIAAPTSASDVYSFGVVLLEVACGRRPIETSVVEEEVVLIDWVRELYAKGCAREAADARISGEYDEGDMEMVLKLGLACCHPDPLRRPTMKEVVAVLLGENPPEAPGKVLSDLVRCGGEPDEAAPLQPSARV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01797 650 Gene3D - 18 278 - -
Cca11g01797 650 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cca11g01797 650 Pfam Protein kinase domain 348 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01797 650 ProSitePatterns Legume lectins beta-chain signature. 134 140 IPR019825 -
Cca11g01797 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cca11g01797 650 CDD lectin_legume_LecRK_Arcelin_ConA 20 260 IPR001220 GO:0030246
Cca11g01797 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 273 IPR013320 -
Cca11g01797 650 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01797 650 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 5 634 - -
Cca11g01797 650 Pfam Legume lectin domain 20 270 IPR001220 GO:0030246
Cca11g01797 650 CDD STKc_IRAK 352 615 - -
Cca11g01797 650 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01797 650 Gene3D Transferase(Phosphotransferase) domain 1 422 623 - -
Cca11g01797 650 PANTHER - 5 634 - -
Cca11g01797 650 SUPERFAMILY Protein kinase-like (PK-like) 324 615 IPR011009 -
Cca11g01797 650 Gene3D Phosphorylase Kinase; domain 1 331 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01797 Cca-Chr11 42840688 42843380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01797 19 617 Receptor kinase-like Gene Family AT1G15530 68.317 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca11g01797 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01797 - - gmx:100780660 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01797 11 42840688 42843380 Cca11g01797 11 42840688 42843380 ECH