Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01796 ATGGGATCCAAACCCTTAGACAATAACAACAATACTATTAAGTTTCTCTATAGCTATGGCGGCAAGATTCGTCCCCGCCGCACCGACGGCATGCTCCGTTACTGCGGCGGCCACACCAGAGTCCTCGCCCTCAATCCCTCCGCTTCTTTCTCAGAGTTGATGGCGAAGCTTAGCGAGTCGTGCGGTTCGCCGGTGAAGCTTAGGTGTCCATTGCCGAACGGAGATTTGGACACTTTAGTTTCCGTCACCAACGACGAAGATTTGGCCAATATAATTGAGGAATCCGATCGAGCTTCTTCGTCGTTGCCTCAACCGTTGAAAATCAGAGCCATTCTTTCGCCGCCAAAGAAATTGTCTCCCGCTACGTCTTCTTCGTCCAGTGCCACTCCCTCTCCGTCCGGTTCGTCTCACTCCTCTTCCGCCGATTCCCTCCCGCCCTCGGCGGCGCATCGGTTCGTTCGGCGGTACTGCTCGCCGGCGCCGGTAATTGGCGTCCGTAACGGAACGGGGAAAGGATGTTGGTGCACGGGGCATTTGGAGAGAAGTCCAAGATTCCTTTACCGTGGGCCTCACCGGAATAATTATTGCTATTGA 594 0.5438 MGSKPLDNNNNTIKFLYSYGGKIRPRRTDGMLRYCGGHTRVLALNPSASFSELMAKLSESCGSPVKLRCPLPNGDLDTLVSVTNDEDLANIIEESDRASSSLPQPLKIRAILSPPKKLSPATSSSSSATPSPSGSSHSSSADSLPPSAAHRFVRRYCSPAPVIGVRNGTGKGCWCTGHLERSPRFLYRGPHRNNYCY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01796 197 Pfam PB1 domain 32 100 IPR000270 GO:0005515
Cca11g01796 197 SMART PB1_new 27 113 IPR000270 GO:0005515
Cca11g01796 197 MobiDBLite consensus disorder prediction 114 146 - -
Cca11g01796 197 CDD PB1_UP2 18 112 - -
Cca11g01796 197 MobiDBLite consensus disorder prediction 117 145 - -
Cca11g01796 197 Gene3D - 33 111 - -
Cca11g01796 197 PANTHER PB1 DOMAIN PROTEIN 3 197 - -
Cca11g01796 197 PANTHER OS05G0427100 PROTEIN-RELATED 3 197 - -
Cca11g01796 197 SUPERFAMILY CAD & PB1 domains 29 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01796 Cca-Chr11 42816503 42817489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01796 7 97 MAP Kinase Kinase Kinase AT3G46920 45.055 3.43e-22 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01796 - - gsj:114393520 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01796 11 42816503 42817489 Cca11g01796 11 42816503 42817489 ECH
Cca11g01796 11 42816503 42817489 Cca03g00418 03 6460551 6461916 PCT