Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01777 ATGGCTCTTGAATCAACATATTCAGCCATCAACTTATCAGTGCTTTGCGTCTTTCTGAGCGTGGCATTGGGGTTGGTGGTGTTTAAGATCAGAAGAAGAAGCAAATCCAACGCACCTCCATCCCCACCCAAGCTACCCTTCATCGGAAACCTTCACCAGCTAGGCACGCTGCCACACCGTTCCTTGCAAGCCCTCTCTCGCAACTATGGCCCACTCATGATGCTTCAAATGGGCCAGATCCCAACGCTGATCGTTTCATCTGCACACGTGGCCGCAGAAATTTTCAAAAACCACGACGTCGTTTTCTCCTACCGCCCCAAGACAACCGCTACTGGAGTCTTTTTCTACGGCTACAAGGACATTGGTTTCTCCCCCTACGGCGAGGAGTGGAGACAGAAAAGAAAGGTCTGCGTTCTCGAGCTCGTCAGCATGAAAAGCGTGCGGTCGTTTCAGTTCATCCGCGCTGAAGAAGTCGCGGAAATGATCGCTGCCATACGCGAGGCGTGTGCCAGTGGAAGTGAAAGTGGAAGCTCATGCGTGCATCTGAGTGAGTTGTTGATTGCACTCACCAACAACACATTGTCTAGGTGCGTTTTTGGACAAAAGTATGACTCACCCGATGGTAGTAGAAGCTTCGGAGTGATTCGGAGGAAGTTGTTGAGTCAGTTCACGGCTTTCTGTGTCGGAGATTTCTTCCCCTCGTTGAGTTGGGTTGATGTTCTAACGGGCCGAATTCGGAAGTTAAAGGCCACTCTTAGTTCGTTAGATGTTTTCTTTGATCAGGTGATTGCAGAACATAAAACAaagatgaagaagaaaggtgaaggtgatggtcaaTCTGATAAGAAAGACTTCGTGGATATTCTCCTTCAACTTGAGGAGGCTCGAATGCTCGGTTTTGACCTCTCCCAAGATAACCTCAAAGCATTGCTAGTGGACATGTTTATAGGGGCAAGTGACACAACTTCAACCACTTTGGAATGGGCTATGGCAGAGCTCATGAAGAATCCAAATACCATGGAAAAGGTCCAAGAAGAGGTAAGAAGAGTGGTCGGGAACAAAGCAGAAGTGGATGAAAACGATGTGAAACAAATGAATTACTTGAAGTGTGTAGTCAAGGAAACTCTAAGGCTACATCCACCTGCTCCTTTTTTGCTTCCTCGAGAAACATCCTCTGCTGTGAAGCTAAGAGGGTACGACATTCCAGCCAAGACAAGAGTAATGTTGAACGCATGGGCAATTCAGAGGGATCCTGAATTTTGGGAGAAACCAGATGAGTTCATTCCAGAGAGATTCGAAGACAGCAAGGTAGATTTCAGAGGACAAGATTTTGAGTTTATTCCGTTTGGTGTTGGGAGAAGGGGGTGCCCTGGAATTACATTTGGGATCACTTTGGCTGAGTATGCACTTGCTAATCTTCTTCGCTGGTTCGATTGGAAGCTGCCTCAAACTCATGCTTCAGTGCAAGGCATAGACATGAGTGAGAAACATGGGATCTCTGTCAACAAGAAGGTTCCACTTCTCCTTCAACCAATACCAATCTCCTTCGAAATTGGATCTAAACCTTGA 1569 0.4602 MALESTYSAINLSVLCVFLSVALGLVVFKIRRRSKSNAPPSPPKLPFIGNLHQLGTLPHRSLQALSRNYGPLMMLQMGQIPTLIVSSAHVAAEIFKNHDVVFSYRPKTTATGVFFYGYKDIGFSPYGEEWRQKRKVCVLELVSMKSVRSFQFIRAEEVAEMIAAIREACASGSESGSSCVHLSELLIALTNNTLSRCVFGQKYDSPDGSRSFGVIRRKLLSQFTAFCVGDFFPSLSWVDVLTGRIRKLKATLSSLDVFFDQVIAEHKTKMKKKGEGDGQSDKKDFVDILLQLEEARMLGFDLSQDNLKALLVDMFIGASDTTSTTLEWAMAELMKNPNTMEKVQEEVRRVVGNKAEVDENDVKQMNYLKCVVKETLRLHPPAPFLLPRETSSAVKLRGYDIPAKTRVMLNAWAIQRDPEFWEKPDEFIPERFEDSKVDFRGQDFEFIPFGVGRRGCPGITFGITLAEYALANLLRWFDWKLPQTHASVQGIDMSEKHGISVNKKVPLLLQPIPISFEIGSKP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01777 522 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 SUPERFAMILY Cytochrome P450 39 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PANTHER CYTOCHROME P450 71B11-RELATED 12 513 - -
Cca11g01777 522 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 Coils Coil 340 360 - -
Cca11g01777 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Cca11g01777 522 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 12 513 - -
Cca11g01777 522 Pfam Cytochrome P450 39 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca11g01777 522 Gene3D Cytochrome P450 25 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01777 Cca-Chr11 42527927 42529934 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01777 29 507 Cytochrome P450 AT3G48310 44.398 6.21e-150 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01777 K20617 - gmx:100792382 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01777 11 42527927 42529934 Cca11g01777 11 42527927 42529934 ECH