Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01765 ATGCGTGCTTTCAAGTCTCTCACAAATACAATGGCAGAGTCGTGCCTTCTTTCTCTCCCTTCCTTCTTCCACGCCAAAGCCAAATCCCTTTCTCTCTCACTTCCCTCCAAGCCCCTTACCCTCCACCTTCCCTCTTCCAATTCCTCGCTCTTCTCCCTCACCTCAAGGCCCACTCGCCACTCCTTCCTCACATTCGTGGCCCAAACGTCGGATTGGGCCCAAGGCGAGGAGGAGGAAACCGCCTGGGAGAACCAGGGCGATTCCACGTGGGGAACTGAAGAGGGTGGCGATGAAAGCGAGGGTGAGGCGGCTGAACCCGTTGAAGAAGTTAAGATCTTTGTTGGGAATTTGCCTTTTGATGTTGACAGTGAGAAGTTGGCATCGCTTTTCGACCAAGCTGGCACCGTTGAGGTTGCTGAGGTTATTTACAATAGGGTCACTGACCGGAGTCGTGGGTTTGGGTTTGTTACGATGAGCACGCTTGAAGAGGTTGAGAAGGCTGTCGAGATGTTCAGTGGCTATGAACTAAATGGAAGAGTGTTGACCGTCAATAAGGCTGCTCCAAAAGGAGCACAGCCAGAACGCCCACCACGCCCACCAAGATCCTTTGGTTCTTCTTTGAGAGTCTACGTTGGCAACTTGCCATGGGATGTTGACAATGCTCGACTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTACGACAGAGAGACTGGTCGATCGCGTGGCTTTGGCTTTGTCACAATGGCCAGTGAGACTGATATGAATGATGCAATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGGGCAATCAGAGTGAATGTTGCAGAGGATAGGCCAAGACGCAGCTCCTTTTGA 879 0.5176 MRAFKSLTNTMAESCLLSLPSFFHAKAKSLSLSLPSKPLTLHLPSSNSSLFSLTSRPTRHSFLTFVAQTSDWAQGEEEETAWENQGDSTWGTEEGGDESEGEAAEPVEEVKIFVGNLPFDVDSEKLASLFDQAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVEMFSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFGSSLRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMASETDMNDAIAALDGQSLDGRAIRVNVAEDRPRRSSF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01765 292 CDD RRM_HP0827_like 111 188 - -
Cca11g01765 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Cca11g01765 292 CDD RRM_HP0827_like 208 284 - -
Cca11g01765 292 PANTHER OS02G0815200 PROTEIN 94 292 - -
Cca11g01765 292 PANTHER OS02G0815200 PROTEIN 3 84 - -
Cca11g01765 292 MobiDBLite consensus disorder prediction 74 105 - -
Cca11g01765 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cca11g01765 292 SUPERFAMILY RNA-binding domain, RBD 105 204 IPR035979 GO:0003676
Cca11g01765 292 PANTHER RIBONUCLEOPROTEIN 3 84 - -
Cca11g01765 292 PANTHER RIBONUCLEOPROTEIN 94 292 - -
Cca11g01765 292 Gene3D - 194 291 IPR012677 -
Cca11g01765 292 Gene3D - 67 193 IPR012677 -
Cca11g01765 292 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cca11g01765 292 SMART rrm1_1 111 184 IPR000504 GO:0003723
Cca11g01765 292 SUPERFAMILY RNA-binding domain, RBD 200 290 IPR035979 GO:0003676
Cca11g01765 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Cca11g01765 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01765 Cca-Chr11 42313188 42316110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01765 112 289 Eukaryotic Initiation Factors Gene Family AT3G16380 35.263 2.90e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01765 - - gmx:100811487 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00394 03 6076911 6078781 Cca11g01765 11 42313188 42316110 ECH
Cca11g01765 11 42313188 42316110 Cca11g01765 11 42313188 42316110 ECH
Cca11g01765 11 42313188 42316110 Cca03g00394 03 6076911 6078781 PCT