Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01758 ATGGCCCAAACCCAAACCCAAACCATATCCATTGCTTACCACACCCACCGCCTCTTACCCGAACCTGATGTTTTCATTCACTCCTCACACGGAACACGCATTCCAGCACACTCTGCACTTCTGGCTTCGGTGTCGCCGGTTTTGGAGAACTTGATAGACCGCCCACGTAAGCATCGGAGCTCCGAGACAATAATCCAAATCCAGGGGGTCCCCGGCGCCGCCGTCACCGCCTTCGTCGGCTTCCTCTACTCCTCCACGTGCAGCGAGGACGAGATGGAGAGGTTCGGGATGCACCTTCTGGCATTGTCGCACGTGTACATGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGTTTAACGCAGCGCTTGACCACGGAGAACGTCGTGGACGTCCTGCAACTGGCGCGCCTCTGCGACGCACCGGATCTCCACCTCCGCTGCATGAAGCTCCTCGCCAATAACTTCAAGGCCGTCGAGGCCACCGAGGGATGGAAGTTCCTCGTCAACCACGATCCCTGGCTCGAGCTCCACATTCTCCGTTTCATCGACGAACACGAAATCAGGAAGAAGAAGTCGAGGAGGCACAGGGAGGAGCAGGGGCTGTACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGCACCGACGTTGGACCCTACGACGCGGAGAGAGAGAGGACACCGTGCGCCAGATTCGCCACGTGCCAAGGTCTTCAGGTTCTCATCCGCCACTTTGCCACGTGCCAGAAGAGGGTGAACGGTGGCTGCGTGCGCTGCAAGCGAATGTGGCAACTCTTTCGGCTTCATTCCTATGTTTGTCACCACACCGATTCCTGCAGGGTTCCTTTTTGCAGGCAATTTCAATTGAAAATGCAGCAAAATAAAAGGAAAGATGATTCTAGGTGGAAACTACTAGCGAGGAAGTTGGCCTCAGCCAAAGTCATGTCTTCCTTGTCTTTGCCAAAGAGGAAGCGAGATGAGGAAATGAGAGTGACAATAAACAATCCCGGGATTAGAAGCTATAAATTACTATGA 1053 0.5499 MAQTQTQTISIAYHTHRLLPEPDVFIHSSHGTRIPAHSALLASVSPVLENLIDRPRKHRSSETIIQIQGVPGAAVTAFVGFLYSSTCSEDEMERFGMHLLALSHVYMVPQLKQRCIKGLTQRLTTENVVDVLQLARLCDAPDLHLRCMKLLANNFKAVEATEGWKFLVNHDPWLELHILRFIDEHEIRKKKSRRHREEQGLYAQLSEAMECLEHICTEGCTDVGPYDAERERTPCARFATCQGLQVLIRHFATCQKRVNGGCVRCKRMWQLFRLHSYVCHHTDSCRVPFCRQFQLKMQQNKRKDDSRWKLLARKLASAKVMSSLSLPKRKRDEEMRVTINNPGIRSYKLL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01758 350 SUPERFAMILY POZ domain 23 122 IPR011333 -
Cca11g01758 350 ProSiteProfiles BTB domain profile. 22 91 IPR000210 GO:0005515
Cca11g01758 350 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 6 348 - -
Cca11g01758 350 Gene3D - 124 195 - -
Cca11g01758 350 SMART BTB_4 22 123 IPR000210 GO:0005515
Cca11g01758 350 Gene3D Potassium Channel Kv1.1; Chain A 14 123 IPR011333 -
Cca11g01758 350 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 6 348 IPR044513 -
Cca11g01758 350 CDD BACK 124 167 - -
Cca11g01758 350 Pfam BTB/POZ domain 22 122 IPR000210 GO:0005515
Cca11g01758 350 SMART TAZ_2 199 291 IPR000197 -
Cca11g01758 350 Gene3D TAZ domain 196 319 IPR035898 -
Cca11g01758 350 SUPERFAMILY TAZ domain 198 299 IPR035898 -
Cca11g01758 350 Pfam TAZ zinc finger 206 290 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01758 Cca-Chr11 42248057 42251216 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca11g01758 BTB 7.5e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01758 - - gmx:100807120 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01758 11 42248057 42251216 Cca11g01758 11 42248057 42251216 ECH
Cca11g01758 11 42248057 42251216 Cca03g00385 03 5991258 5995694 PCT