Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01757 ATGGCCACCCCTtccctctctctcctcaccctcctcttctctctcctcaccccactcctcatttcctctTCCCCTGTCCAGAACCCCCAGTGGGTGGCCCATGAAGTAAACAGGAAAATCAATGGCTCTTTAGCAAGGAGGAATTTAGGGTACCTGTCTTGTGGGACAGGTAACCCCATTGATGATTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTAGCGGATTGTGCAATTGGGTTCGGGAAAAACGCAATAGGAGGAAAGAACGGGAAAGTATACGTGGTGACGGATTCGGGCGACGACGACCCCGTGACACCGAAGCCGGGGACACTCCGTTACGCGGTGATTCAGGATGAGCCATTGTGGATCACATTCGCGAGAGACATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCCTTCAAGACCATCGACGGAAGAGGCGCTAGCGTCCACATTGCGGGGGGTCCATGCATTACTATACAGTACGTGACGAACGTTATAATCCACGGGATTCACATTCATGATTGTAAGCAAGGCGGCAACGCTATGGTGCGCGACTCCCCACGCCACTACGGCTGGAGAACCGTCTCGGACGGCGACGGCGTTTCCATCTTCGGAGGAAGCCACATTTGGGTTGACCATTGCTCTTTGTCTAACTGCAAGGATGGCTTAATCGACGCCATCCATGGCTCCACTGCCATCACCATCTCCAACAATTACATGACTCACCATGATAAAGTCATGCTTTTGGGCCACAGTGACTCCTACACTCAAGACAAGAACATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAGAGGATGCCTAGGTGTAGGCATGGATACTTTCATGTGGTCAACAATGACTACACCCACTGGGAAATGTATGCTATTGGGGGAAGTGCTAACCCAACCATCAATAGTCAAGGCAACAGGTTTGTTGCACCTGATGATAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGGAAGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAACGGTGCGTTTTTCACAGCATCGGGGGCTGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCCTGAGTGCAAGGCCATCTTCACTGGTGGGGTCCATCACAACAACTGCGGGTGCACTCAACTGTAGGAAGGGTTCCCATTGCTGA 1221 0.4914 MATPSLSLLTLLFSLLTPLLISSSPVQNPQWVAHEVNRKINGSLARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKVYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTTAGALNCRKGSHC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Cca11g01757 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Cca11g01757 406 PANTHER PECTATE LYASE 18-RELATED 5 403 IPR045032 GO:0030570
Cca11g01757 406 Pfam Pectate lyase 140 323 IPR002022 -
Cca11g01757 406 PANTHER PECTATE LYASE 5 403 - -
Cca11g01757 406 SMART amb_all 132 329 IPR002022 -
Cca11g01757 406 Gene3D - 57 399 IPR012334 -
Cca11g01757 406 SUPERFAMILY Pectin lyase-like 34 401 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01757 Cca-Chr11 42227238 42229309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01757 6 406 Polysaccharide Lyase AT5G63180 80.446 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01757 K01728 - gmx:100101868 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00382 03 5962244 5964763 Cca11g01757 11 42227238 42229309 ECH
Cca01g00144 01 1414696 1417135 Cca11g01757 11 42227238 42229309 ECH
Cca11g01757 11 42227238 42229309 Cca11g01757 11 42227238 42229309 ECH
Cca11g01757 11 42227238 42229309 Cca03g00382 03 5962244 5964763 PCT