Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01756 ATGTTGGTTTATTATATCACCCCATCAGGGCCATTATTTCAGCAACCCCTTTTCCACGCCGCACCATTCAAGGGAtttttctttgattttccttgttttcatttgctcagGTTGGTTTGCACTGTTGTTTCACGTGGGTTCTGGTTATGCAAGAGTGAGGCAGTGATGGATGGTAGGAGGCATTCTGTTGACATTCCTATTTCCAAAACTCTCGTGGCACTGAGGAGACTAAGGTCATTGAGGGATCCATCAACTAATGGTATTAGCACACTCTCTCCTTTGATTGATGATGGAGATTGGGAGAATGGTTCTAGCAACGGGGTTTCTCTGAGTTTGAGGTTTCTGAATGCTTCTTGTGCTGGTGATTGTGATGATAATGGTCTTTCTTCATCAAATAGTTTAGATTTTAAGGATAAAAAAGAGCAGGACACTGCTGAGTTTGAAATGGACACGTTGAACTCTAAGATGAACTACTGTGGGATTGGGATCTCATTTCAGGAAAGTCACCAAGATGATGGATTAGTTTACGCTGATGCTAAGGAGCAAGGTAAATCACCAAAAGAAAGCTTTTGTAGCAACCATGAAGGTAGAGGATTGGATTTGGTTTCCATCATGCCTCCTTGTGATCATTTGAAGGATGGGGAGTCATGCTATTATTCAACTGCATTAAGGGTAGATCACTCTAAGTCAGCAAGAAAATCACTACGTAAGAATCAAGTGAGACCATCTGAAGTGATGGGTGATATTTTAAGCCATGTAGGAAGTCAACAATGCCTTTCTGTTCGTGATGCTTTTTCAACTCGTAGCGCCTCAGAACTTAACACTCAAGATGTTGATGTTTTAGATAATTCCCTTGGATGTGGATTAAGGAGTTGTTGGTTAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAATAGAAGACCTTCCCTTGATATTGCATCGTGTTAATGAGACAGATCTAAGTGGACATAGAAACATGAGACATATTGGCGGCGAAACTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAAGCCAAAATCTTTCAGTGATTTGGTTGGACAAAATGTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTAGAGGAAGGATATCATCATTTTATCTCTTCCATGGACCACGCGGCACAGGCAAGACCTCTGCTTCTAGGATATTTGCTGCTGCACTGAATTGCCTCTCTCCTTTGGAGCAAAAGCCTTGTGATCTGTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAAATGTTAAGGAAGTGGATTCTTTGAGAATCAATCGGGCAGACAAGGTTAAATCTCTTGTTAAGCATGCATGCATTCCACCGGTTTCCTCACGTTTTAAGGTGTTCATTGTTGATGAGTGTCAGTTATTGCATGGGGAAACATGGGCTTGTCTTTTGAATAGCCTCGAGAATGTTTCTCAACATGTGGTTTTTTTGATGATCACACCTGATCTGGATAAGCTTCCTCGGAGTGCAGTTTCCAGAGCCCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGCAAGAAGATTGGAAAAAATTTGTGTTGAAGAAGGCCTTGAATCTGAACAAGTTGCTTTGGACTTTATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAAATTACTATTTCCTTAGTCCACGAGCTTATGGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTTGACCTGGCTTTATCATCTGACACTTCAAATACAGTTATAAGAGCCAGGGAACTTGTCAGTACAAGGATAGATCCTGTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATCTGAACTTGGTGGTTCTGAAATCAGAAGAAAATTTTGTAATAGATATACCTCGGAAGCAGACCTACAGAAACTAAGTCATGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCCGTAGAATATTCATCTGAGGATACAAACAATACAAAGTTGTGTACACGAGCTGCATCAAATAGAGATGGTGATAGCTACAGTACATCCCCTAAAGGGGACAGCTTGGAGCATCTTGCTACGACAGGTCAATGTGATGACAAGTCATATATATTAGGAGTACATGAGGATCACAAAGGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTTAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAATTTGTATTAATCAAGGCCGTGCGGTTGCTGAGTTGGAGTTCCACCGTCGTGGCTATGTAAGTAGGGCTGAGAAGTCATGGAAGCTTATTGCAAGCTCCCTGCAGTTCATTTTGGGTTGTAACCTCGAGCTTAGAATTAATTATGTACCTTCTAATACTTCGGACTCTAAGTATGCTAAATTGAAGAGGTCGTCCATCAATTTCTTCAGTTGTTCTCGTAGAATCCGCTGGAAATCTTTATCATCTAATGAACTAGGATGCGAATCAGATAATGCTGATTATACCTCTCAAAAGCTCATGATGAAGGATCAAAGTCTAACTTGTTGCTCTGATTGTGCATCTCGAGTGCCACCACTTGAGTCATACCATAGGATGCAAGCTGTGACAACATTGAGATGTAGTGAAGGGAATTTGCTAAGCTCGGGGAAAATGTTTTTCAATAGGTCAGCTCTAACAACTGCACCATATCTGCTGAGGAGCATTTCTAGCTCAAACAAAGCGAAGAACCGAGGAAGGAAAGCATATGAGGAACTATGTTCCCGGACAACGGCGAGGATCCTAGGGAAGGCACTAGCCAATCTTTTTCGTTCTCATCCATTTCTCTTCTCTCTCGCCTCTCACTTTCCACCGATTCACTTCCTCACACTCACTCCGATTGAACGCACAACGCCGCCTCCTCGTTTAGGGTTTTACTTCCCAACTTCCTTCCTCTCCCGATCTTCTACGCGACACCGTCCCTCGCTTCGATTCATACAATCCGCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAGGAATCCGATTCTGATTTGCATTTTGTAGTCACCGGTTTGGCTTGTTTTTGCGCTTTGTGTAAATGGCTTCGATCTCCGTCGTCGTTGCTTGCTGACCATCATGTAAAAGCCCCTGCTGGTGGTAAGGCACAAACCGCAGGGATAGCTGTGCGGCATGTGCGTCGGTCACACTCGGGAAAGTATGTACGGGTGAAGAAGGATGGTGCTGGTGGTAAAGGCACCTGGGGAAAATTGCTTGATACAGATATTATTTCTCACATAGACCGAAATGATCCAAATTATGACAGCGGTGAGGAACCTTATCAGCTGGTTGGATCTACTGTGACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAAGAATATTTCAGTAATGGGGATGTCGAATTGGCAGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATACTATCCATACTTCATCAAACGCCTTGTGTCCATGGCAATGGACAGGCATGATAAGGAGAAAGAGATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTAGGGACGGGTTTTTTATGCTTCTTGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGACATTCTTGCATTATTCTTGGCACGTGCTGTTGTTGATGATATTCTTCCTCCAGCTTTTCTTACCAGGGCAAAGAAGGCTCTTCCAGAATCTTCAAAGGGAGTTCAGGTAATCCAGACTGCTGAAAAGAGTTATCTCTCTGCACCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAGGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTAGGGGTTTCATTCTTCCATCATGAGGTTGTTAAGAGGGCTCTGATACTTGCCATGGAGATTCGTTCAGCAGAACCTCTAATGTTGAAGTTATTAAAAGAAGCAGCAGAAGAAGGGCTTGTTAGTTCCAGCCAGATGGTGAAAGGGTTTTCTCGTTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCCAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAGCTGAAGATGGGGAAATCCAAGTTGAAGATGAGAAAGTGAGGAAGTACAAAAAGGAAGCTGTAACTATCATTCATGAATATTTTCTTTCTGATGACATTCCTGAACTGATTCGAAGTCTTGAAGATCTTGGAGCACCTGAATACAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACGGAGGATATAGTTAACGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAAAGAGCTTGCTCTGTTTTTAGCTCGAGCTGTTATTGATGATGTATTGGCCCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAATGCAGTGGCAGCGAAACCGTGCGCATGGCTCGATCACTCATTGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGCTGGGGTGGAGGGACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCATGAAGCTGTTGGAGGAGTACGAAAGTGGTGGGGTTGTGAGTGAAGCATGCCAGTGTATCCGTGACTTGGGAATGGCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGATTATGGCCATGGAGAAAAAGAATGATCGGATGCTAGATCTACTGCAGGAATTCTTCAGTGAGGGCCTGATCACCATTAATCAGATGACTAAAGGTTTCACCCGTATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTAGCTTCTATGTGGAGCATGCTCAGGCCAAGGGCTGGCTTCTACCATCATTTGATTCGCCTGCGGCAGATGTCTGA 5238 0.4257 MLVYYITPSGPLFQQPLFHAAPFKGFFFDFPCFHLLRLVCTVVSRGFWLCKSEAVMDGRRHSVDIPISKTLVALRRLRSLRDPSTNGISTLSPLIDDGDWENGSSNGVSLSLRFLNASCAGDCDDNGLSSSNSLDFKDKKEQDTAEFEMDTLNSKMNYCGIGISFQESHQDDGLVYADAKEQGKSPKESFCSNHEGRGLDLVSIMPPCDHLKDGESCYYSTALRVDHSKSARKSLRKNQVRPSEVMGDILSHVGSQQCLSVRDAFSTRSASELNTQDVDVLDNSLGCGLRSCWLKSPRFRESNHYSEIEDLPLILHRVNETDLSGHRNMRHIGGETSPTLETPRSLSMKFKPKSFSDLVGQNVIGKSLLGAISRGRISSFYLFHGPRGTGKTSASRIFAAALNCLSPLEQKPCDLCRECVLFFSGRSKNVKEVDSLRINRADKVKSLVKHACIPPVSSRFKVFIVDECQLLHGETWACLLNSLENVSQHVVFLMITPDLDKLPRSAVSRAQRYHFAKIKDADIARRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELMGVISDDELLDLLDLALSSDTSNTVIRARELVSTRIDPVQLISQLANLIMDILAGKSELGGSEIRRKFCNRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSEDTNNTKLCTRAASNRDGDSYSTSPKGDSLEHLATTGQCDDKSYILGVHEDHKGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSICINQGRAVAELEFHRRGYVSRAEKSWKLIASSLQFILGCNLELRINYVPSNTSDSKYAKLKRSSINFFSCSRRIRWKSLSSNELGCESDNADYTSQKLMMKDQSLTCCSDCASRVPPLESYHRMQAVTTLRCSEGNLLSSGKMFFNRSALTTAPYLLRSISSSNKAKNRGRKAYEELCSRTTARILGKALANLFRSHPFLFSLASHFPPIHFLTLTPIERTTPPPRLGFYFPTSFLSRSSTRHRPSLRFIQSACFSCLGSRSGPSTEESDSDLHFVVTGLACFCALCKWLRSPSSLLADHHVKAPAGGKAQTAGIAVRHVRRSHSGKYVRVKKDGAGGKGTWGKLLDTDIISHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLTRAKKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALILAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPAAEDGEIQVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTALDILDASKELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMAFFNHEVVKKALIMAMEKKNDRMLDLLQEFFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFSFYVEHAQAKGWLLPSFDSPAADV 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01756 1745 ProSiteProfiles MI domain profile. 1164 1285 IPR003891 -
Cca11g01756 1745 MobiDBLite consensus disorder prediction 708 727 - -
Cca11g01756 1745 Gene3D - 582 695 - -
Cca11g01756 1745 SUPERFAMILY post-AAA+ oligomerization domain-like 588 689 IPR008921 GO:0003677|GO:0006260
Cca11g01756 1745 SMART ma3_7 1626 1735 IPR003891 -
Cca11g01756 1745 SMART ma3_7 1165 1276 IPR003891 -
Cca11g01756 1745 SMART ma3_7 1463 1574 IPR003891 -
Cca11g01756 1745 SMART ma3_7 1329 1440 IPR003891 -
Cca11g01756 1745 Pfam MA3 domain 1165 1276 IPR003891 -
Cca11g01756 1745 Pfam MA3 domain 1464 1573 IPR003891 -
Cca11g01756 1745 Pfam MA3 domain 1329 1440 IPR003891 -
Cca11g01756 1745 Pfam MA3 domain 1627 1734 IPR003891 -
Cca11g01756 1745 Pfam DNA polymerase III, delta subunit 361 518 - -
Cca11g01756 1745 Gene3D - 1157 1305 - -
Cca11g01756 1745 Gene3D - 1452 1605 - -
Cca11g01756 1745 Gene3D - 339 516 IPR027417 -
Cca11g01756 1745 SUPERFAMILY ARM repeat 1162 1322 IPR016024 -
Cca11g01756 1745 SUPERFAMILY ARM repeat 1622 1738 IPR016024 -
Cca11g01756 1745 CDD HLD_clamp_pol_III_gamma_tau 518 581 IPR045085 -
Cca11g01756 1745 PANTHER PROGRAMMED CELL DEATH 4 1075 1737 IPR039778 GO:0045892
Cca11g01756 1745 Gene3D - 1613 1740 - -
Cca11g01756 1745 Gene3D - 1315 1447 - -
Cca11g01756 1745 SUPERFAMILY ARM repeat 1325 1445 IPR016024 -
Cca11g01756 1745 CDD AAA 359 509 - -
Cca11g01756 1745 ProSiteProfiles MI domain profile. 1462 1583 IPR003891 -
Cca11g01756 1745 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 345 691 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Cca11g01756 1745 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1075 1737 - -
Cca11g01756 1745 ProSiteProfiles MI domain profile. 1328 1449 IPR003891 -
Cca11g01756 1745 SUPERFAMILY ARM repeat 1460 1618 IPR016024 -
Cca11g01756 1745 Gene3D - 519 581 - -
Cca11g01756 1745 ProSiteProfiles MI domain profile. 1625 1744 IPR003891 -
Cca11g01756 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 568 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01756 Cca-Chr11 42188383 42202337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01756 337 630 Core DNA Replication Machinery Family AT1G21690 24.746 6.22e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01756 - - pvu:PHAVU_003G207500g 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01756 11 42188383 42202337 Cca11g01756 11 42188383 42202337 ECH
Cca11g01756 11 42188383 42202337 Cca03g00381 03 5902530 5907240 PCT