Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01755 ATGGAAGGCTCTGAATCCGATTCTGCAGCACTTTCCAATTCCAATGGCGCAGAGCCCCAATTGGAGGCTCCTTCTTCCCCCGTCGCTCATCCTGAGCCGTCAGATCTCAATCACGCGGCTGAGGAAGACCCACTCGCTGGGGAGCTTCAGACTAAGTTGGATTTGAAGGGTGGGGACGAAGGTGAGGAGAAAGTTTCGAACTTTAACGATGGTGGAGGAGTTTGTGACGAAGAAACTGCTAAGGGTGATGGAGATAGTAGGGGTTGGGagactaatagttggaatgaggaagtgggtgttgatgttgatgttgagggtgatggtgatggtgatgtggatgttcatgatgatgacgatgatggtgatgGAGTGGAAAAGAAGGAAGAGAAAAGCAGTGGTGGAACTCACCAGTACCCTTTGAGGCCTGAAGCTGAAGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCCATTAGGAGGAAAAGCCAGGCTACTAAAGAGAAGGCTGGAGAAAGAGAAGAACCTACAGATAGATCGGGAATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATACAACCACACAAGAGGAAAATTTTCAACAACGCCAGTTTTAGAACTCAACTTTCTTGGTCTGCCTATTCGTCCGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGATCCTACAGCTGGTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAACCGTCCTGGTCTTCTTCAAGAACATTAAATGAAGCAACTCCTTTTGTGCCAATGATGCTTTCACCTACTCAGGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACTTACCTGAGAGGAGCATGCATCCACCTTCTACGTTTGTCATGAACAACCCAACAATCGATACAAATGTTTACATGCCCCATCCCCATCAAAAGCAAGTGCTTGCTGAAGAGTTTCCAGAACGGCCTGGTGAACCTGAATGCAACTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATAGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTCTGAGACCTGATCAAAGTGTTTGCTCACACTACAGTCGCTATGGAATATGCAAATTTGGACCAGCTTGTAAGTATGACCATCCCATAAACTTGCAGCCCTTGATGCCTGAACTTGGTCAGCAATCCTACTCAAACTCGGCTAGTGTTGAGGTGGCTGGGATAGGTGGAAGTGCAGTTACAACTGACGCAACAATTCAGCAATCTGTGTAA 1449 0.4251 MEGSESDSAALSNSNGAEPQLEAPSSPVAHPEPSDLNHAAEEDPLAGELQTKLDLKGGDEGEEKVSNFNDGGGVCDEETAKGDGDSRGWETNSWNEEVGVDVDVEGDGDGDVDVHDDDDDGDGVEKKEEKSSGGTHQYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKSQATKEKAGEREEPTDRSGMTECKYYQRSGGCKFGKSCKYNHTRGKFSTTPVLELNFLGLPIRPGERECPYYMRTGSCKFGANCKFNHPDPTAGGGCDPPSGYGNGGSISLQGVSQPSWSSSRTLNEATPFVPMMLSPTQGVSTQSSDWNGYQAPVYLPERSMHPPSTFVMNNPTIDTNVYMPHPHQKQVLAEEFPERPGEPECNFFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKYDHPINLQPLMPELGQQSYSNSASVEVAGIGGSAVTTDATIQQSV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01755 482 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Cca11g01755 482 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 482 - -
Cca11g01755 482 SUPERFAMILY CCCH zinc finger 237 261 IPR036855 GO:0046872
Cca11g01755 482 MobiDBLite consensus disorder prediction 120 134 - -
Cca11g01755 482 MobiDBLite consensus disorder prediction 100 119 - -
Cca11g01755 482 MobiDBLite consensus disorder prediction 35 66 - -
Cca11g01755 482 MobiDBLite consensus disorder prediction 1 139 - -
Cca11g01755 482 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Cca11g01755 482 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Cca11g01755 482 SMART c3hfinal6 369 396 IPR000571 GO:0046872
Cca11g01755 482 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Cca11g01755 482 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Cca11g01755 482 Gene3D - 186 267 - -
Cca11g01755 482 PANTHER PROTEIN PHOSPHATASE RELATED 6 482 - -
Cca11g01755 482 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Cca11g01755 482 ProSiteProfiles Zinc finger C3H1-type profile. 369 397 IPR000571 GO:0046872
Cca11g01755 482 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g01755 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 371 396 IPR000571 GO:0046872
Cca11g01755 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 167 IPR000571 GO:0046872
Cca11g01755 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 260 IPR000571 GO:0046872
Cca11g01755 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 190 213 IPR000571 GO:0046872
Cca11g01755 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 441 IPR000571 GO:0046872
Cca11g01755 482 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Cca11g01755 482 SUPERFAMILY CCCH zinc finger 191 218 IPR036855 GO:0046872
Cca11g01755 482 SUPERFAMILY CCCH zinc finger 413 441 IPR036855 GO:0046872
Cca11g01755 482 Gene3D - 114 180 - -
Cca11g01755 482 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Cca11g01755 482 Gene3D - 360 443 - -
Cca11g01755 482 SUPERFAMILY CCCH zinc finger 140 169 IPR036855 GO:0046872
Cca11g01755 482 SUPERFAMILY CCCH zinc finger 374 398 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01755 Cca-Chr11 42168932 42173144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01755 135 444 C2H2 Transcription Factor Family AT3G02830 40.785 1.14e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g01755 zf-CCCH 2.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01755 - - gmx:100786894 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00427 08 6660203 6661750 Cca11g01755 11 42168932 42173144 ECH
Cca11g01755 11 42168932 42173144 Cca11g01755 11 42168932 42173144 ECH
Cca11g01755 11 42168932 42173144 Cca03g00375 03 5823665 5829188 PCT