Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01752 ATGTTGCGTTACCAAATGATTCATTCAACACCCTCTTTCCGTGACTCCCTCAAGGCACTTGAAGCTGACATCCAACATGCCAATGTGCTGGCAGCTTCTATTCCAAGGGACAAGGGCAGGACTTGCCTTCAAATGAAGTTGGTCTACAATAAAGTGGCACCTCTTTTTCTCTTTCTATTTCAATGGATGGATTTCTCATGCTCCTGTCTACCTTCAACTCATTTTAATCTTTTTCGTGTAGTTGTCTACAAGGTGCATACCAATGCGAAGCCAGATACTTATTCTTGTGGAAGAAAAGCAACTGTAAGCGAGTTCTACAATGTTATATTACCTTCTCTACAGCGTCTTCATGGTGATTTAGTAGAAGCTGACATTACTCGAGCAAAAGATCACAACATGGAGATGGTTATCAAGGGGAATGAGGAGGATAAGAGGAATACTTCTGATTTTGACTTGGAGAGAGAAATTGAGTGTGGCATTTGCTTAGAGTCCTGCACCAAAATGGTTTTGCCTAATTGCTGCCACGCCATGTGTATAAATTGTTACAATGACTGGAAAACAAGGTCAGAGTCTTGTCCATTTTGCCGGAGAAGTTTAAAGAGAGTTAAATCGGGGGATTTGTGGGTTCTAACATGCAGTAGAGATGTGATTGATATGCAAACCATATATAGAGAAGATATGTTGCGTCTCTATCTCTTTGTAAACAACCTTCCCCAATATACCCCAGATGCTCTTTTTCTTGGGTATTACGAGTACTTATTTTAA 765 0.4039 MLRYQMIHSTPSFRDSLKALEADIQHANVLAASIPRDKGRTCLQMKLVYNKVAPLFLFLFQWMDFSCSCLPSTHFNLFRVVVYKVHTNAKPDTYSCGRKATVSEFYNVILPSLQRLHGDLVEADITRAKDHNMEMVIKGNEEDKRNTSDFDLEREIECGICLESCTKMVLPNCCHAMCINCYNDWKTRSESCPFCRRSLKRVKSGDLWVLTCSRDVIDMQTIYREDMLRLYLFVNNLPQYTPDALFLGYYEYLF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01752 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Cca11g01752 254 Pfam Zinc finger, C3HC4 type (RING finger) 156 201 - -
Cca11g01752 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 206 IPR013083 -
Cca11g01752 254 PANTHER OS01G0905700 PROTEIN 8 254 - -
Cca11g01752 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Cca11g01752 254 SMART ring_2 158 195 IPR001841 -
Cca11g01752 254 PANTHER RING FINGER PROTEIN 41, 151 8 254 - -
Cca11g01752 254 SUPERFAMILY RING/U-box 144 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01752 Cca-Chr11 42147885 42149622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01752 136 199 C3H Transcription Factor Family AT1G04360 32.353 4.50e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01752 - - jre:109018365 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01752 11 42147885 42149622 Cca11g01752 11 42147885 42149622 ECH