Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01747 ATGGCCCCTCCTCTTTATAGTGGCTTCAACGGCGAAATCGATGCTGAAAACCCATCTTTTTTTCTTGATCAATGGGAAACGGTTCACCCTGCCCCTGTGTATTATCATCACCAACCCATTTCGGAGAACATCACTGATGATTCTTCGACGTTGGTCCTACCCTCTTGCGATGGAACCATCAGGGATAACAAAAGGGTGAAGAGAACCGTGGGCATCCCCGTTTGGCTAGGAACTTTTAGCACTTCAAGCAGCAACATAAACAACCCTAGTTTCCTCAACAGCAACACCAGTAATAGGAATAGGAATAGCATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACTCAGAGATATCTGGCAGTAGAAGAGGCAGAAGAAGAAGCGAAAAGTTCAGAAAGTGGTGGAAGCTGTGAAGAAGAAGATGGTTGTGCTGATGGAGTGAGGCTGGTTCAGCTTCTAATAGCTTGTGCCGAAGCAGTGGCTTGTCGTGACAAATCACACGCATCAATATTACTATCCGAACTCAAAGCCAATGCTTTAGTATTCGGCTCCTCGTTCCAAAGAGTAGCATCATGTTTTGTCCAGGGCCTCACCGAGAGGCTTAATCTGATTCAACCAATCGGGTCCGTGAGCCCGATGCCCCCCATGATGAACATCATGGACGCAGCCTCGGAAGAAATGGAGGAAGCATTCAGGTTGGTTTACGAGCTGTGTCCGCACATTCAGTTTGGACACTTTGTGGCTAATTCCACAGTATTGGAAGCCTTTGAGGGTGAGAGTTTCGTCCATGTCGTGGACCTGGGCATGAGCCTAGGTCTACGACATGGGCACCAATGGAGAGGACTAATCCAGAGCCTCAGCAACCGCGCAAACGGCGAACCTGTTCGCCGCTTGCGGATCACGGGAGTGGGGCTCTGCGAAAGGCTCCAAACCATCGGTGATGAACTCTCCGTTTATGCAAACAACTTGGGCGTTAACTTGGAATTCTCATTAGTGAGAAAAAATTTGGAAAATTTGCAACCTGAAGACATAGAAGTGAGGGGGGAAGAGGTGCTGGTGGTGAACAGCATTCTGCAGCTGCATTGCGTGGTGAAGGAAAGCCGCGGAGCTTTGAATTCAGTGCTGCAAATGGTTCACGGGCTTGGGCCGAAGGTGTTAGTGATGGTGGAGCAGGACTCGAGTCACAATGGTCCCTTTTTTCTTGGAAGGTTTATGGAATCGCTGCATTACTACTCTGCTATATTCGACTCGTTGGATGTTATGTTTCCGAAGTATGACACAAAGCGTGCGAAGATGGAGCAGTTTTACTTTGGTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGGCCGATGAGGATGGAGAGGCACGAGAGAGTGGACCAGTGGCGAAGGAGGATGAGTAGGGCAGGGTTTCAGGCTGCGCCTGTTAAGATGGTGGCTCAGGCAAAGCAATGGCTTCTCAAGAACAAGGTTTGTGAAGGGTACACGGTCGTGGAAGAGAAAGGGTGTTTGGTTCTTGGGTGGAAATCGAAGCCTATTGTCGCGGTTTCTTGTTGGAAATGCTGA 1572 0.4879 MAPPLYSGFNGEIDAENPSFFLDQWETVHPAPVYYHHQPISENITDDSSTLVLPSCDGTIRDNKRVKRTVGIPVWLGTFSTSSSNINNPSFLNSNTSNRNRNSIPKLHFRDHIRTYTQRYLAVEEAEEEAKSSESGGSCEEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLTERLNLIQPIGSVSPMPPMMNIMDAASEEMEEAFRLVYELCPHIQFGHFVANSTVLEAFEGESFVHVVDLGMSLGLRHGHQWRGLIQSLSNRANGEPVRRLRITGVGLCERLQTIGDELSVYANNLGVNLEFSLVRKNLENLQPEDIEVRGEEVLVVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMFPKYDTKRAKMEQFYFGEEIKNIVSCEGPMRMERHERVDQWRRRMSRAGFQAAPVKMVAQAKQWLLKNKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01747 523 ProSiteProfiles GRAS family profile. 142 522 IPR005202 -
Cca11g01747 523 Pfam GRAS domain family 151 522 IPR005202 -
Cca11g01747 523 PANTHER DELLA PROTEIN RGL1-LIKE 84 522 - -
Cca11g01747 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01747 Cca-Chr11 42096690 42098468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01747 143 523 GRAS Transcription Factor Family AT1G66350 38.342 1.11e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g01747 GRAS 2.4e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01747 - - gmx:100815959 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01747 11 42096690 42098468 Cca11g01747 11 42096690 42098468 ECH