Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01745 ATGGCAACCGGTTTCCGATTGTTGGTGATCCCCACGGCGAGGCCCGTTCTCAGCAAAACCCTCTTCTTCATGTCCTCGTGTTGGCCTCGCACGCTTCACACGCCATCATCGGAGGAGTCCCGAAACGTGAGGGTTTGGGCGTGGTGGGACTTCAAGAGCTGCGCCGTGCCCGGGGGCTTCGACGCCGCCAAAGTCGCCCCCGCAATAATGGAGGCCGTCAGAGCCAACGGCATCAAAGGCCCCCTCAGCATCACCGCTTTCGGCGACGTTCTGCAACTCCCCCGATACCGCCAGGAAGCCCTCGCTTACACCGGCGTTCGCTTCACCCACGTCTCCAACGATGAAAGGAATAGCGCCGACATTATCGTTGACCTAATGTATTGGGTTTCCCAAAACCCTCCACCTGCGCATCTCTTTTTGATTTCCGGTGATAGAGACTTTGCTGGCATTTTGCATAGGTTGAGAATGAGTAATTACAATATCTTACTTGCTACACCGGAGAGGACTCCTAGTGTTCTCTGCGGTGCTGCAACAATAGCGTGGCATTGGCCTTCCTTGCTTAAGGGAGAAAATCTTACTGGAAAGCATTTCAATTATCCTCCTGATGGTCCCTCCGGTTCTTGGTATGGAAGCTGTATGGTGAGCCAGCTTGAGAAGCCGCCTGCGCCGTGTTTGCCCAATGTTGAGGTCTATGAGCCTTCCTCAGGTTCAGTTCCTAAGTCACTTGTGAGGCAGATTAGGCATATATTGAGTATGCATCCCAAAGGGATAGGCATTACTGAGCTTCGTGCTGAGTTGGCAAAATGTGATGTGCAGTTGGATAAGAGTTTGTTTGGACATAAGAACTTTTCTCGCTTTTTGTTGTCGTTGAAACGTGTTCAGCTTCGGCCTGTTGGCGACGGTAGCTATTGTGTGCATTTGGTTTCTTCGGAATCTGCAGAATCTTTTGAGAGCAGTTCTGTGGCGTCAAATGTGTCTGGTGTTGGGAATGGGGATAGAGGACGTGCAGCGGCTGTGAAGCCAAATGGTGATGATAAAAGTGAGGTTAGGGATGCAGAAGAGACATCCTTGATCTCCACTTGCCTTGAAAGGAGTTCGGATGATGATTTAAAATCTTTCCAACCAGGGCCTCCACAGGGGAGACCCAATGAGGAAATTGTGGATGGTAAATCATCATCTTCTGTAGTGGTTGAAGGCCATGTTTGTCAGCCCCCAAATGAATTGCAGAAATCTTCTGTGGCTAATGCGCAACAGTCAAAGACTCAACAGCCACCCAAGGACAACAAAGATTCCAAAACAAAGATGGATTCCTTACAAATGACATCTCAAAAATCTGATAATGACATTGTTAAGTCTGAGGATGCAAGTCATAAAAGTATGGAAAAGCTTATAACTTCAGAGAATCACCCTGCTGGAAATGTTCACAAGATGGTGGAAAACAATGTTATTGCAAATTATGAGTCTGGATATTTTGAAGCAAAGAACAAATATGAGAAATCATCATCTTCTGTAGTGGTTGAAGGCCATGTTTGTCAGCCCCCAAATGAATTGCAGAAATCTTCTGTGGCTAATGCGCAACAGTCAAAGACTCAACAGCCACCCAAGGACAACAAAGATTCCAAAACAAAGATGGATTCCTTACAAATGACATCTCAAAAATCTGATAATGACATTGTTAAGTCTGAGGATGCAAGTCATAAAAGTATGGAAAAGCTTATAACTTCAGAGAATCACCCTGCTGGAAATGTTCACAAGATGGTGGAAAACAATGTTATTGCAAATTATGAGTCTGGATATTTTGAAGCAAAGAACAAATATGAGAAATCATCATCTTCTGTAGTGGTTGAAGGCCATGTTTGTCAGCCCCCAAATGAATTGCAGAAATCTTCTGTGGCTAATGCGCAACAGTCAAAGACTCAACAGCCACCCAAGGACAACAAAGATTCCAAAACAAAGATGGATTCCTTACAAATGACATCTCAAAAATCTGATAATGACATTGTTAAGTCTGAGGATGCAAGTCATAAAAGTATGGAAAAGCTTATAACTTCAGAGAATCACTCTGCTGGAAATGTTCACAAGATGGTGGAAAACAATGTTATTGCAAATTATGAGTCTGGATATTTTGAAGCCAAGAACAAATATGAGAAATCAACTGGAAAGGAGGTTGATGAAGTTTTTCACAACCCATCTTCTTTACCAGTTGACGACTCTATAGTTGTCCAAAGACCTGGTGGAAGCGCTGAAACTAATAGCAGAAGTCCAACATTCTTTAGCTGGTTTAGAAGTTGGTGGCCATTTGGGAAAAACAATGCAAAGTATGACAATTTGACCGCTCATCAGAACAAGGTGGTTAGTGAAGTTGAGGATTCCAAGTTATCTGAACTGGACCAGTCTGTTCGTCAATTTGAAGAGCCCAAGTCAACAGAACTGAGTCAGAATGTTAGTCATATTGAGGATTCCAAATTATCTGAACTGGACCAGTCTGTTCGTCAATTTGAAGAGCCCAAGTCAACAGAACTGAGTCAGAATGTTAGTCATATTGAGGATTCCAAGTTATCTGAACTGGACCAGACTGTTCGTCAATTCGAAGAGTGCGAGTTATCAGAACAGAATCAGAATGTTAGTCATTCCAGAAAGCCCAAGTTATTTTCTAGTGCTTCCTTTTGGAATGAAATGGAATCATTTATTTTTGCGCCGAAAGCATCACTTCTTTTCTCCCAATCAAGAAGCAGGGAGGATGTGGTGCATAGATTACAAAGTGGCGGTCCCCTGGTTCTTAGATCACTCCCCAAAAAAGATATCCTTCATTTGGTGGAATTGTTAATAATAGAGAAAAAATGGTTGGAAGAAAGCCCCTCCCGAATATTTCCTTTTAAGCTAACTCAACCTGTTCAGAAGAATTCATTGATGGACCAATCTCATGGTGCAAATGGTTTGAGATCTCTCTTTCTAAGCAGAACATCACAGTCGAACTTGCAAAAGTCAGTAGAACATGATGTGGAGAAACACAATCAGAGTATTTCTCATTCTCAAGCTTCTGCTCCAGTCACTGAAACAATATATATTAAGAGATCAAGATATGATATATTAGGAGACTGTCAGAAACTTGTGAGTGAGATACTGAGGGAACATCCCGAGGGATATAATATTGGTTGTTTCCGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATAAAGAAACTTGGTTATCAAAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTTAAATTAGAGTCTACTTATATTTTTCCTTCTGTGACTACTGTCTGTGATTCTGACTCCGAAACGTCTACCCTCAAAACTCAAGCAACCACTGATAGTCATGCAGCCTCTAACTCAGACAGTGAATTATCTGAGTCAGCCCTGAAACATGCTAACAATGAATCTTCATGGGACGAGTTAGGTCCTGTTTCTTTCAACAAATCCAACATGAGTGATTTGGAAATAAAGTCAAGTCAGAAAGCTATAGAACTGGATACATCAAAGTCAAAGCATCCTGATTATGAACCTGTATTCTCAGATGATGAGTCTTCTGCATCTGAAGGAGAGAGCTCTTGTTTATCTCAATCAGAAGAGCAAAGAAAGCCAAAATGTAATGAACAAAACAGTTCTTTTTGGCAAGCTATGGATTTGTGGCACAGCAACAAGGAAGGAGAGAATAGTGTCAAGAACTCAGACAAGTATGACAGCTTGGGTGTTTCTCTGACTGGTATTTTAGATTCATCCACTGAGTTGACCAAGGATACTCATTCCAAAATTCCTTCCTCGAATTACAGAGAGAATAGTGTCAAGAAACCAGACAATGTTGAGAGCTTGGATGTTTCTCTGGCTGACATTTTTAATTCATCCACTGAGTCGACCAGTAGTACACTTTCCAAAATTCCTTCACCGAATAAAGGAGAGAAGCAAAGATCTGAAAAGAAATATTCGTTTGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGGTTGATGGCTTCAAGAAAACAGATGAGTCAAATATGCAAAACTAG 4047 0.4228 MATGFRLLVIPTARPVLSKTLFFMSSCWPRTLHTPSSEESRNVRVWAWWDFKSCAVPGGFDAAKVAPAIMEAVRANGIKGPLSITAFGDVLQLPRYRQEALAYTGVRFTHVSNDERNSADIIVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMSNYNILLATPERTPSVLCGAATIAWHWPSLLKGENLTGKHFNYPPDGPSGSWYGSCMVSQLEKPPAPCLPNVEVYEPSSGSVPKSLVRQIRHILSMHPKGIGITELRAELAKCDVQLDKSLFGHKNFSRFLLSLKRVQLRPVGDGSYCVHLVSSESAESFESSSVASNVSGVGNGDRGRAAAVKPNGDDKSEVRDAEETSLISTCLERSSDDDLKSFQPGPPQGRPNEEIVDGKSSSSVVVEGHVCQPPNELQKSSVANAQQSKTQQPPKDNKDSKTKMDSLQMTSQKSDNDIVKSEDASHKSMEKLITSENHPAGNVHKMVENNVIANYESGYFEAKNKYEKSSSSVVVEGHVCQPPNELQKSSVANAQQSKTQQPPKDNKDSKTKMDSLQMTSQKSDNDIVKSEDASHKSMEKLITSENHPAGNVHKMVENNVIANYESGYFEAKNKYEKSSSSVVVEGHVCQPPNELQKSSVANAQQSKTQQPPKDNKDSKTKMDSLQMTSQKSDNDIVKSEDASHKSMEKLITSENHSAGNVHKMVENNVIANYESGYFEAKNKYEKSTGKEVDEVFHNPSSLPVDDSIVVQRPGGSAETNSRSPTFFSWFRSWWPFGKNNAKYDNLTAHQNKVVSEVEDSKLSELDQSVRQFEEPKSTELSQNVSHIEDSKLSELDQSVRQFEEPKSTELSQNVSHIEDSKLSELDQTVRQFEECELSEQNQNVSHSRKPKLFSSASFWNEMESFIFAPKASLLFSQSRSREDVVHRLQSGGPLVLRSLPKKDILHLVELLIIEKKWLEESPSRIFPFKLTQPVQKNSLMDQSHGANGLRSLFLSRTSQSNLQKSVEHDVEKHNQSISHSQASAPVTETIYIKRSRYDILGDCQKLVSEILREHPEGYNIGCFRRLFVDRYGYHLDIKKLGYQKLAALLQIMPGVKLESTYIFPSVTTVCDSDSETSTLKTQATTDSHAASNSDSELSESALKHANNESSWDELGPVSFNKSNMSDLEIKSSQKAIELDTSKSKHPDYEPVFSDDESSASEGESSCLSQSEEQRKPKCNEQNSSFWQAMDLWHSNKEGENSVKNSDKYDSLGVSLTGILDSSTELTKDTHSKIPSSNYRENSVKKPDNVESLDVSLADIFNSSTESTSSTLSKIPSPNKGEKQRSEKKYSFVADPVLPNKDKLVDGFKKTDESNMQN 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1294 1324 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1170 1213 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1294 1309 - -
Cca11g01745 1348 Pfam NYN domain 44 177 IPR021139 GO:0004540
Cca11g01745 1348 MobiDBLite consensus disorder prediction 624 677 - -
Cca11g01745 1348 CDD PIN_limkain_b1_N_like 44 166 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 447 464 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1102 1148 - -
Cca11g01745 1348 Gene3D - 1026 1092 IPR041966 -
Cca11g01745 1348 PANTHER LIMKAIN B LKAP 24 487 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca11g01745 1348 PANTHER LIMKAIN B LKAP 605 1247 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca11g01745 1348 CDD LOTUS 1031 1086 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 624 642 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1250 1277 - -
Cca11g01745 1348 ProSiteProfiles OST-type HTH domain profile. 238 309 IPR025605 -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 405 424 - -
Cca11g01745 1348 Pfam OST-HTH/LOTUS domain 240 303 IPR025605 -
Cca11g01745 1348 Pfam OST-HTH/LOTUS domain 1035 1089 IPR025605 -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 515 533 - -
Cca11g01745 1348 ProSiteProfiles OST-type HTH domain profile. 1030 1104 IPR025605 -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 319 472 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 515 568 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 338 353 - -
Cca11g01745 1348 MobiDBLite consensus disorder prediction 1250 1273 - -
Cca11g01745 1348 Gene3D - 237 314 IPR041966 -
Cca11g01745 1348 PANTHER EMB|CAB71880.1 605 1247 - -
Cca11g01745 1348 PANTHER EMB|CAB71880.1 24 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01745 Cca-Chr11 42063085 42068016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01745 47 189 C2H2 Transcription Factor Family AT5G61190 43.448 6.89e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01745 - - ccaj:109801017 2611.64