Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01738 ATGGCGGCAGGGCGAAAAAGTGTTTCTCTGAAGAGAGACTCGTTCTATTATAGTTCCACCAAGGTGCTTGATCACTTTAAGAATGGCTCTTTGGCCGTGGAAGGTTGTGGATATCGCAGCCATCACTTCGTTCGTTCCGGAGAGAGTGGGTTTCATGGTGGAAAAGAGGAGACAGAGCCCGGTGAGATCTGTGTTGAAGAGCATGGGGAATATGAGCACTCATATGGTTTGCCACCGCCAGAGAAGAAAAGGAAGTTTTCTCCAATTGTGTGGGACCTAGCAGAGGGGGAGGGAAGGACTGCTTCAAAGAGTAGGATCTCGCAAATTGCTGATCTGTCTCTCTCTCGTGCTTCTCTTCCGACCAGTCCTGGAGCTAATCGTGTTTATGGTGGGGATGTTATGGAGGAGTCTTCACCAGATTCTTCTGATGTGTTGCCCCGAAGCTTTAAACCCGATGTGGAGGAAGAGAATGATGTGCAAGGATGGACCATCAAAAAGTCAAGATGGGCTTGTGATGCTCCCTCACCGATGGGTGCTGATGATCAACGCAAGCATGGCAAATTGAGCTCCAGTCCTGAACTTGTTGAATCCCATGATGGCAGTGGATGTTCGGAGAGCACAGTCACTAGATCATCAGGAAGCAGTGGAAGAGATTTTTATCTGGGTCCTTCTACTGATGACACCGATTCCGAAAAGGATTTAGTTGTCTCCATGGTTGATGTTGAGGAACAAAGTAATTTTAGTGATTCTTCGTCAGATTCGGATGAGAGTGGTAGTTTGATGCACGCGCAGAGAAATATAAACATGCTTCAGAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGCATTGTCTATAAAGCTAGGGATAAGAAGACTGGAGAAGTAGTTGCATTGAAGAAGGTGAAAATGAACATAGAGAGGGATGGCTTTCCTTTGTCATCCTTGAGGGAAATAAACATTCTTTTGTCTTTTAATCATCCCTCCATTGTGAATGTTAAAGAAGTAGTAGTTGATGATTTTGATGGTACTTTTATGGTAATGGAGTACATGGAGTCTGACCTTAAGGGGATGATGGAGGCCAAGAAGCAGCCCTTCAGCATGGGTGAAATTAAATCCTTGATTAGGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAATTGGCTTAAAATATGCGACTTTGGATTGTCAAGGCAATATGGAAGCCCTCTAAAGCCATATACTCCTGTTGTGGTTACTCTATGGTACAGAGCACCTGAACTTTTGCTGGGTTCTAAAGAATACTCAACAGCTATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGCCAAGGAGCCTCTATTCAGGGGTAAAAGTGAGCTGGAACAACTTGATAAGATTTTTCGAACCTTGGGTACCCCACATGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTTAAGCAACCGTATAATATGCTAAGGAAGAAGTTTCCAGCCACATCATTCACTGGTTTGCCAGTTTTATCTGAGCTGGGATTTGACTTGTTGAAGAACCTTCTAACTTATGACCCTGAAAAGAGGATAACTGCTGAAGATGCCCTCCTTCATGATTGGTTCCATGAAGCCCCACTTCCCAAATCTGACTTCAAGCCTATTTTTCCTTCTTGGCAGTGCTAG 1713 0.4372 MAAGRKSVSLKRDSFYYSSTKVLDHFKNGSLAVEGCGYRSHHFVRSGESGFHGGKEETEPGEICVEEHGEYEHSYGLPPPEKKRKFSPIVWDLAEGEGRTASKSRISQIADLSLSRASLPTSPGANRVYGGDVMEESSPDSSDVLPRSFKPDVEEENDVQGWTIKKSRWACDAPSPMGADDQRKHGKLSSSPELVESHDGSGCSESTVTRSSGSSGRDFYLGPSTDDTDSEKDLVVSMVDVEEQSNFSDSSSDSDESGSLMHAQRNINMLQSCRSVCEFEMIKKINEGTYGIVYKARDKKTGEVVALKKVKMNIERDGFPLSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMESDLKGMMEAKKQPFSMGEIKSLIRQLLEGVKYLHDNWLKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGSKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDKIFRTLGTPHEKIWPGLSKLPGAKAKFVKQPYNMLRKKFPATSFTGLPVLSELGFDLLKNLLTYDPEKRITAEDALLHDWFHEAPLPKSDFKPIFPSWQC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01738 570 CDD STKc_CDC2L1 273 551 IPR045267 GO:0004674|GO:0005524|GO:0006468
Cca11g01738 570 PANTHER CELL DIVISION PROTEIN KINASE 76 569 - -
Cca11g01738 570 Gene3D Transferase(Phosphotransferase) domain 1 361 561 - -
Cca11g01738 570 PANTHER CYCLIN-DEPENDENT KINASE 76 569 - -
Cca11g01738 570 Gene3D Phosphorylase Kinase; domain 1 261 360 - -
Cca11g01738 570 SUPERFAMILY Protein kinase-like (PK-like) 273 556 IPR011009 -
Cca11g01738 570 MobiDBLite consensus disorder prediction 178 192 - -
Cca11g01738 570 ProSiteProfiles Protein kinase domain profile. 279 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01738 570 Pfam Protein kinase domain 279 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01738 570 Pfam Protein kinase domain 398 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01738 570 MobiDBLite consensus disorder prediction 117 231 - -
Cca11g01738 570 MobiDBLite consensus disorder prediction 194 221 - -
Cca11g01738 570 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01738 Cca-Chr11 41970079 41972442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01738 278 551 Core Cell Cycle Gene Families AT3G48750 43.729 1.56e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Cca11g01738 Pkinase 9.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01738 K08818 - gmx:100788840 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01738 11 41970079 41972442 Cca11g01738 11 41970079 41972442 ECH