Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01735 ATGGCCACTTGCACTTCTCTTTCCCTCTCTCCTCACACCTTCTGTTGCCGCCATCGCCCTTACCCTACGCGCCGTTCCCTTACTTGCTCTCTCTCCTCTTCGCCCCTCCCAGATACGGATGGACCGAAAGTACTACGTAAAAGATCAAGAAGAACAGAAGGTCCTAAAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCTATTGGCGGGTTGGGTGAAATTGGGATGAACTGCATGTTGGTTGGCAACTACGATCGGTATATCCTCATTGATGCCGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACATTTATAAGAAAATGGAGACACAAAATTGAGGCAGTTGTTATAACACATGGCCATGAAGATCATATTGGTGCATTGCCTTGGGTTATCCCAGCATTAGATTCTCATACGCCAATTTTTGCTTCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATCTTCGTTCCATCTCGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGACTAGTGCTTCGCTGTTCTGATGGTACCATTCTTCATACCGGGGATTGGAAGATTGATGAAACACCATTAGATGGCAGAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACATTAATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGAAAATTTCAGCTGCTAAAGGAAGGGTTATAACGACCCAGTTTGCATCAAATATCCATCGTCTTGGAAGTGTGAAAGCTGCAGCTGATTTGACTGGTAGAAAGTTGGTATTTGTTGGCATGTCATTAAGAACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAGGATTTGCTTATTGTAACAACTGGCTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCGGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAGCTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTACCCATACACGGAGAACTCTTGTTCTTGAAAGAGCATGAATTACTTGGGAAATCAACTGGCATTAGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAATAGAAGAGTCCTTTCAAATGGTTTCATGTCATTTGGAAAAGAGAATTTGCAGTTGATGTATAGTGATGGTGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCGTTAGATGGCATCATAGTGGTTAGCATGGAAATATTTCGTCCTCAAAGCCTAGACAATCCGGATGAAAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGATGCACTCCATAAGGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAGCTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTAATGAAATAAACACAAGGTTGTCTGGAAAATTCCATGTAGATGGGATATCACCATTGAGAAAAGTCGTGGATGGGAAAGAAAACCTGAGAACCAAAAAGCAAATAAGAGATGGTCTACCACCTACTGAAGACATCACTATCTCAAGTGGATATGAGGATGACTTGTCTGAGACAGGGGATTCAGATGCAATTTTGAAACCATTTGTTGAATCATCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCGACGAAAGGAAAAGTTGTCCCCACTGAGGGATGATGGTTCTGAAGACACTGAAGAATGCAATTCTGTAGATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAGAGAAATAAGTGGAAACATGATGAAGTTAGGAAGCTGATTGGCATGCGTGGGGAACTGAATGATAAATTTCAAGTTGTGAAGGGCAGGATGGCCCTATGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATATGAGCAGGAGGTCAAGAATGTCAAGAGCAAGAAAAAATGGCCGTATCTTGAGGACATGGAAAGGATTCTGTCTGATAACGAAGCACTAGCAACAAAATGA 2586 0.4184 MATCTSLSLSPHTFCCRHRPYPTRRSLTCSLSSSPLPDTDGPKVLRKRSRRTEGPKKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGRVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRKISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSAIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFMSFGKENLQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQSLDNPDENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVSCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIAIENPAAVLANEINTRLSGKFHVDGISPLRKVVDGKENLRTKKQIRDGLPPTEDITISSGYEDDLSETGDSDAILKPFVESSPVEKSIKANNGYVRRKEKLSPLRDDGSEDTEECNSVDTSNSEPKSSKSAKRNKWKHDEVRKLIGMRGELNDKFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEQEVKNVKSKKKWPYLEDMERILSDNEALATK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01735 861 MobiDBLite consensus disorder prediction 29 63 - -
Cca11g01735 861 Pfam Myb/SANT-like DNA-binding domain 767 851 IPR044822 -
Cca11g01735 861 Gene3D - 83 495 IPR036866 -
Cca11g01735 861 MobiDBLite consensus disorder prediction 733 769 - -
Cca11g01735 861 CDD GT1 768 830 - -
Cca11g01735 861 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Cca11g01735 861 Gene3D - 770 831 - -
Cca11g01735 861 MobiDBLite consensus disorder prediction 41 63 - -
Cca11g01735 861 CDD RNaseJ_MBL-fold 82 493 - -
Cca11g01735 861 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Cca11g01735 861 Gene3D - 280 430 IPR042173 -
Cca11g01735 861 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 861 - -
Cca11g01735 861 ProSiteProfiles Myb-like domain profile. 762 826 IPR001005 -
Cca11g01735 861 PANTHER RIBONUCLEASE J 1 861 - -
Cca11g01735 861 MobiDBLite consensus disorder prediction 680 703 - -
Cca11g01735 861 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Cca11g01735 861 SMART Lactamase_B_5a 91 288 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01735 Cca-Chr11 41927656 41937056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01735 769 853 Trihelix Transcription Factor Family AT2G38250 32.184 5.64e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca11g01735 Lactamase_B_2 1.7e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01735 - - gmx:100814619 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01735 11 41927656 41937056 Cca03g00342 03 5307550 5316141 PCT