Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01728 ATGGATATGGTTATAGAGGTTCTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCAACCACCTCCTCTTCTTCTCCAACATCCTCACATCACCCCTTCGTCATCGGTGTCTCTGGAGGCACTGCATCGGGGAAAACCACAGTGTGTGACATGATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCTGTCAGGATTCATTCTACCGCGGTTTGACAAATGATGAGTTGAAACACGTTCATGAGTATAATTTTGATCATCCTAATGCATTTGACACAGAGCAACTCGTAGAAACCATCAGTAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCAATATATGATTTTAAGCTTCACCAGAGATCTTCTGACAGATCTCGACAGGTGAATGCATCTGAAGTAATCATTCTGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAGACGGGATACTGTTGAGAGGGGTAGAGATGTACACTCTGTACTGGAACAGGCAAGACTTATTATCTTTACATACATCAGACTGACAGATTATGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCGTCCAAAAAATATGCTGACATTATCATACCTCGTGGGGGAGAAAATCGTGTAGCAATTGACTTGATTGTTCAACATATTCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCCAATTTGAATGTTATACAGTCCACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAAGGACATATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTACCGTTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGCGGCGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGCAAAGGAATAAAGATAGGAAAAATTCTCATTCACCGTGGTGATGGTGAAGGTGGTGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCAGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACACTGCTAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGAATACATTGTGTTTGCAAACACTTTCCGCATCTGAAACTCATCACATCGGAGATTGAAGAAGGTTTAAATGACCAGTCCCGTGTCATACCAGGGTTAGGAGAATTTGGTGACCGCTACTTTGGTACGGACGATTCTTAG 1410 0.4191 MDMVIEVLSGAHFSGWHPSTTSSSSPTSSHHPFVIGVSGGTASGKTTVCDMIIQQLQDHRVVLVCQDSFYRGLTNDELKHVHEYNFDHPNAFDTEQLVETISKLKSGQSVQVPIYDFKLHQRSSDRSRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQARLIIFTYIRLTDYAKFVKPAFDDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRGDGEGGETQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESQIIFLNLISAPEGIHCVCKHFPHLKLITSEIEEGLNDQSRVIPGLGEFGDRYFGTDDS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01728 469 CDD PRTases_typeI 322 426 IPR000836 -
Cca11g01728 469 Pfam Uracil phosphoribosyltransferase 263 466 - -
Cca11g01728 469 Pfam Phosphoribulokinase / Uridine kinase family 34 233 IPR006083 GO:0005524|GO:0016301
Cca11g01728 469 SUPERFAMILY PRTase-like 248 467 IPR029057 -
Cca11g01728 469 TIGRFAM udk: uridine kinase 32 245 IPR000764 -
Cca11g01728 469 Gene3D - 249 466 IPR029057 -
Cca11g01728 469 Gene3D - 28 248 IPR027417 -
Cca11g01728 469 PRINTS Uridine kinase signature 32 49 - -
Cca11g01728 469 PRINTS Uridine kinase signature 62 73 - -
Cca11g01728 469 PRINTS Uridine kinase signature 107 122 - -
Cca11g01728 469 PRINTS Uridine kinase signature 164 174 - -
Cca11g01728 469 PRINTS Uridine kinase signature 178 189 - -
Cca11g01728 469 CDD UMPK 34 245 IPR000764 -
Cca11g01728 469 PANTHER URIDINE KINASE 14 465 - -
Cca11g01728 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 238 IPR027417 -
Cca11g01728 469 MobiDBLite consensus disorder prediction 16 36 - -
Cca11g01728 469 PANTHER URIDINE KINASE 14 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01728 Cca-Chr11 41833805 41838772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01728 1 468 PRT Gene Family AT3G27190 73.931 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01728 K00876 - gmx:100816209 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01728 11 41833805 41838772 Cca11g01728 11 41833805 41838772 ECH