LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g01718	CATCCGAGTGTAATATCAGTTTTCCTAAACAAAGAACACAAATTGCACACAACACACTCATGGAATTTCCTTGGGTTAGAGAGAAATGGTGAATTTTCGCATGACTCAGTATGGCGGAAGACATTGGGTGAAGATATCATAATTGCAAATATAGACACAGGTGTTTGGCCAGAATCCAAGAGTTTTAGTGATGAAGGGATAGGACCCATCCCAAAACGGTGGCGAGGAATCTGTCAAAAGAATAAGAACACTCGAGATAAATTCCACTGCAACAGGAAGCTTATTGGAGCAAGATATTTTTACAAAGGTTACGAGGCAAAATTGGGTCAAAAACTGAATGATTCGATCTTGAGTGCACGTGACTATGAAGGTCATGGTTCACACACTTTATCAACAGCTGGTGGTAACTTTGTCCATGGAGCTAGTGTTTTTGGCTTTGGCAATGGAACTGCGAGTGGTGGATCACCAAAAGCTCGAGTTGCAACCTATAAGGTGTGTTGGCCACAGTCTGTATTGTTCGGTGGTGGATGTTTTGATGCAGACATATTGGCTGCTTTTGATACTGCCATAAGTGACGGTGTTGATGTGCTTTCGGTGTCTTTGGGTTCATCTGTACCCTCAGAATATTCCCAAAACAGTATATCCATAGGGTCTTTCCATGCAGTTGCTAACGGCGTAATAGTAGTGGTTTCTGCAGGAAATGAAGGGCCTTATCCTTCAACTACATCCAGCAATGAACCATGGACGCTCACTGTTGCTGCAAGCACAACTGACAGAGACTTCGTTAGTTATGTTACACTTGGTAACAAGAAAGTTCTCAAGGGAGCTAGTCTTTCAGAGTATGCGTTACCATCTAATAAGATGTACCCGTTGATCAGTGCTATTGATGCCAAAGCTTATAATGCATCTATTATAGAAGCACTTTTATGCAGGAAAGGAACTCTTGATCCTGAGAAGGTGAAGGGGAAAATATTGGTCTGTTTAAGCAATGGTTTTACAATTGATGAGGGGGTGGAAGCTGCCAGTGTAGGCGCAGCTGGAATGATTTTGGCTAATGACAAGTACTCAGGGAAGGAAATTTCCCCCCAACCCCATGTGCTTCCAGCTTCAAATGTTAACTTTGAGGATGGCAATGACATTTATAATTACATCAGAACTACAAAGTCTCCTGTGGCATACATTTCAAGGGTGAAAACAGAATTAGGAGTAAAGCCAGCTCCATATGTGGCTTCATTTTCATCAAAGGGTCCAAATCATTTTGAACCAGCAATCCTCAAGCCTGATGTGACTGCACCAGGAGTCAACATCATTGCTGCTTATAGTGAAGCTGTATCTCTCACAGAGCTAGATTCTGACAAACGAAGAACGCCTTTCTTTACTTTGTCTGGAACTTCAATGTCATGTCCTCATGTCGCTGGCCTTGCTGGGCTTCTCAAAGCCCTTCATCCTGATTGGAGTCCAGCTGCCATTAAGTCAGCAATCATTACCTCAGCAACCACACTAGATAACTCTAGAAAGCCAATCCTGGATGAATCATTGAACAAGGCAACTCCATTTGACTATGGTGCAGGGCACATTCAACCTAATCGTGCTATGAACCCTGGACTTGTATATGACTTGAATATTACTGATTATTTGAACTTTTTGTGTGGTCGTGGCTACAACAGTTCACAGCTGAAAATGTTCTACGGCAAGCCTTACACTTGTCCAAAGTCGTTCAATATTGCAGATTTCAATTATCCGGCAATCACAATTCCAAAATTTGGCCCTGGACATTCTATGAATATCACTCGAACTGTTACCAATGTTGGGTCCCCAAGAACGTACAAGGTGCACATCAAGGCACCACCACAAGTTCGAGTTTCGGTTGATCCTAGGGAATTGATCTTCAAGGAAAAGGGTGAAAAAAAGGAGTTCAGAGTTACAATGACATTGAAGCCGCAAAGTATGAACACAAGTGATTACGTATTCGGGTGGTTGACATGGAGTGATGGCAGGCACCAACGTGTCAGGAGTCCTATTTCAGTTAACCTTACACAATGA	2043	0.4258	HPSVISVFLNKEHKLHTTHSWNFLGLERNGEFSHDSVWRKTLGEDIIIANIDTGVWPESKSFSDEGIGPIPKRWRGICQKNKNTRDKFHCNRKLIGARYFYKGYEAKLGQKLNDSILSARDYEGHGSHTLSTAGGNFVHGASVFGFGNGTASGGSPKARVATYKVCWPQSVLFGGGCFDADILAAFDTAISDGVDVLSVSLGSSVPSEYSQNSISIGSFHAVANGVIVVVSAGNEGPYPSTTSSNEPWTLTVAASTTDRDFVSYVTLGNKKVLKGASLSEYALPSNKMYPLISAIDAKAYNASIIEALLCRKGTLDPEKVKGKILVCLSNGFTIDEGVEAASVGAAGMILANDKYSGKEISPQPHVLPASNVNFEDGNDIYNYIRTTKSPVAYISRVKTELGVKPAPYVASFSSKGPNHFEPAILKPDVTAPGVNIIAAYSEAVSLTELDSDKRRTPFFTLSGTSMSCPHVAGLAGLLKALHPDWSPAAIKSAIITSATTLDNSRKPILDESLNKATPFDYGAGHIQPNRAMNPGLVYDLNITDYLNFLCGRGYNSSQLKMFYGKPYTCPKSFNIADFNYPAITIPKFGPGHSMNITRTVTNVGSPRTYKVHIKAPPQVRVSVDPRELIFKEKGEKKEFRVTMTLKPQSMNTSDYVFGWLTWSDGRHQRVRSPISVNLTQ	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g01718	680	ProSiteProfiles	Serine proteases, subtilase domain profile.	20	532	-	-
	Cca11g01718	680	PANTHER	SUBTILISIN-LIKE PROTEASE SBT5.3	3	676	-	-
	Cca11g01718	680	Gene3D	-	258	401	-	-
	Cca11g01718	680	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	3	676	IPR045051	-
	Cca11g01718	680	Gene3D	Peptidase S8/S53 domain	45	545	IPR036852	GO:0004252\|GO:0006508
	Cca11g01718	680	CDD	PA_subtilisin_like	264	394	-	-
	Cca11g01718	680	PRINTS	Subtilisin serine protease family (S8) signature	43	62	IPR015500	-
	Cca11g01718	680	PRINTS	Subtilisin serine protease family (S8) signature	462	478	IPR015500	-
	Cca11g01718	680	PRINTS	Subtilisin serine protease family (S8) signature	121	134	IPR015500	-
	Cca11g01718	680	Gene3D	-	549	679	-	-
	Cca11g01718	680	SUPERFAMILY	Subtilisin-like	15	536	IPR036852	GO:0004252\|GO:0006508
	Cca11g01718	680	CDD	Peptidases_S8_3	13	499	IPR034197	-
	Cca11g01718	680	Pfam	Subtilase family	43	502	IPR000209	GO:0006508\|GO:0008236
	Cca11g01718	680	Pfam	Fibronectin type-III domain	577	676	IPR041469	-
	Cca11g01718	680	Pfam	PA domain	310	380	IPR003137	-
	Cca11g01718	680	ProSitePatterns	Serine proteases, subtilase family, serine active site.	463	473	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g01718	Cca-Chr11	41645350	41648028	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g01718	1	679	Subtilisin-like Serine Gene Family	AT5G59810	58.211	0.0	773

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g01718	-		-	ccaj:109807044	1353.58