Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01716 ATGGGAAAAGCATCAAAGTGGTTTCGCGGGTTTCTTGGTCTGAGAAAAACAGAGTACAGTAACTCCCCCGCCAAGCCTCCCAAAGAGAAGCGCCGATGGACCTTCGTTAAGTCATACACAGAAAAGGACAACGCCACTGCCGCCACACTAACGAGCAACAGCGGCAGGTGCGACGCCGGGCCCATCAGGATTCGCCAGCATCGGGCCGCCGTTAAGATCCAAGCCGCTTTTCGCGGCTGTTTGGCAAGGAGAGCACTGCGAGCATTAAAGGGTTTGGTGAAGCTCCAAGCACTGGTGAGAGGTCACATTGAGAGGAAACGCACAGCAGAATGGCTTAAAAGAGTGCAAGCTCTCTTAAAAGCACAGGCACAAGTCTCTGCAGGGTTGACCTTGCATGCCTCACCTTGTAGTGCAAAGTTATCTAGCCAACTTCATGGTCCAGCAACACCAGAAAAATTTGAAAGTCCCATCAGATCTAAGAGCATGAAATATGACCAGTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTATCCAGATCACTGGCTATCAAGAGATATGTGGGACTAGATCAGAGAGTCAAGTACATGAACACTCGTGGAGCTCAGGAAGATCATTGATAAGAACTTATAGCTCCAGTGATGAAAGAAATGACAAGGTCCTTGAAATAGATTCTGGAAAACCACACTTCACACTCAAGCGTAGAAACCTCTCTTACTCCACGGGTTTTGACCATTATAGCAAGAGTTTGAACAGCACAAAGGAGTCAACATCTCTTCAATCGGGTCAAAGTCAATGTTGTGAAGTTCAGTCTTACAGCTCACAAAAGATCAACGAGGTTGAGCAGAGTCCATTTTGCACTGCAGACAATAGTCCCCAATTTTTATCTGCCACTTCTAAAGATGAAGGATTCAAAAGGAGCCCTTTTACACCTACTAGGAGTGATGGCTCTAGAAGCTACATTCGTGGCTACCCTGACTACCCAAGTTACATGGCATGCACCAAGTCTTCAAAGGCAAAGGTGAGGTCTCTGAGTGCCCCAAAACAAAGGCCTCAAAGTGAGAGATCAGGTTCATCTAATAGGTACTCACTCAATGGATTTGATGCATCAAGATTGGCCACGCAAAGGGCAATGCATCCAAACTTCGCCAACAAAGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATACTGA 1218 0.4688 MGKASKWFRGFLGLRKTEYSNSPAKPPKEKRRWTFVKSYTEKDNATAATLTSNSGRCDAGPIRIRQHRAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRVQALLKAQAQVSAGLTLHASPCSAKLSSQLHGPATPEKFESPIRSKSMKYDQSPILKRNGSKSCIQITGYQEICGTRSESQVHEHSWSSGRSLIRTYSSSDERNDKVLEIDSGKPHFTLKRRNLSYSTGFDHYSKSLNSTKESTSLQSGQSQCCEVQSYSSQKINEVEQSPFCTADNSPQFLSATSKDEGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTKSSKAKVRSLSAPKQRPQSERSGSSNRYSLNGFDASRLATQRAMHPNFANKAYPGSGRLDKLGMPVGYRY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01716 405 Pfam IQ calmodulin-binding motif 93 107 IPR000048 GO:0005515
Cca11g01716 405 Pfam IQ calmodulin-binding motif 67 87 IPR000048 GO:0005515
Cca11g01716 405 MobiDBLite consensus disorder prediction 341 366 - -
Cca11g01716 405 Pfam Protein of unknown function (DUF4005) 292 369 IPR025064 -
Cca11g01716 405 MobiDBLite consensus disorder prediction 298 318 - -
Cca11g01716 405 MobiDBLite consensus disorder prediction 140 162 - -
Cca11g01716 405 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
Cca11g01716 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 113 IPR027417 -
Cca11g01716 405 MobiDBLite consensus disorder prediction 298 321 - -
Cca11g01716 405 PANTHER IQ-DOMAIN 5-RELATED 64 400 - -
Cca11g01716 405 ProSiteProfiles IQ motif profile. 90 117 IPR000048 GO:0005515
Cca11g01716 405 Gene3D - 64 118 - -
Cca11g01716 405 PANTHER CALMODULIN BINDING PROTEIN IQD22 64 400 - -
Cca11g01716 405 SMART iq_5 88 109 IPR000048 GO:0005515
Cca11g01716 405 SMART iq_5 65 87 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01716 Cca-Chr11 41626605 41629988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01716 69 405 IQD Protein Family AT4G23060 42.737 6.52e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01716 - - gmx:100793587 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01716 11 41626605 41629988 Cca11g01716 11 41626605 41629988 ECH