Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g01708 | ATGTCGTCGTCGTCGTCATCAAGTAGCGCCTACGACGTGCCATGGGTGGAGAAGTACCGTCCCAACAGAGTCGCCGACATTGTCGGCAACGAGGACGCCGTCTCCAGACTCCAAGTCATCGCTCGCGACGGCAACATGCCCAACCTCATTCTCTCCGGTCCTCCCGGAACCGGGAAAACCACTAGCATTCTCGCCCTCGCGCACGAGCTTCTCGGCCCAAATTACAAGGAAGCCGTTCTCGAACTAAATGCATCGGATGATAGAGGAATTGATGTTGTGAGGAATAAGATCAAGATGTTTGCTCAGAAGAAAGTGACACTACCTCCGGGGCGACACAAGGTGGTGATACTTGATGAAGCTGATAGCATGACCTCTGGGGCGCAGCAAGCATTGAGAAGGACGATGGAGATATTTTCTAACACTACTCGCTTCGCTCTTGCTTGCAATACCTCCGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGATTATCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCCTTGAATAACTTGCAAGCAACATTCAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTAGAATCAACCTTGAATTGTAA | 714 | 0.4888 | MSSSSSSSSAYDVPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIFSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVRINLEL | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g01708 | 237 | CDD | HLD_clamp_RFC | 170 | 231 | - | - | |
| Cca11g01708 | 237 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 6 | 231 | - | - | |
| Cca11g01708 | 237 | CDD | AAA | 28 | 165 | - | - | |
| Cca11g01708 | 237 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 11 | 229 | IPR027417 | - | |
| Cca11g01708 | 237 | SMART | AAA_5 | 45 | 171 | IPR003593 | - | |
| Cca11g01708 | 237 | Gene3D | - | 171 | 232 | - | - | |
| Cca11g01708 | 237 | Pfam | ATPase family associated with various cellular activities (AAA) | 49 | 167 | IPR003959 | GO:0005524|GO:0016887 | |
| Cca11g01708 | 237 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 6 | 231 | - | - | |
| Cca11g01708 | 237 | Gene3D | - | 6 | 170 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g01708 | Cca-Chr11 | 41492236 | 41496025 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g01708 | 10 | 231 | Core DNA Replication Machinery Family | AT1G63160 | 92.793 | 1.53e-154 | 431 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g01708 | K10755 | - | qsu:111999495 | 427.557 |