Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01705 ATGTTGGCTGGGTGTTCTAGTTCGACATTGTTGTCACCGAGGCACAGATTGAGGAGCGAAGCATCAGCACAGTTTCAAGCCTGCCACTTCCAGATGAACACGCAGCGATTGGATTTACCATGCACCACCACCTTCCCTCGCAAAGACACCTCTTCACGTTCTCAGCCCCTGAGGCCAGTGGGGCTCTCCGTGGAGAAGCCACTAGAATCCAAGACCAGCACCTGTTCCCTCAAGCACAACATTCGACTCCCACCCTTGGCAACCACAGCAGCACCAACACCCCTGGGGGCAGAGAGAGAGTCAATCAAGGACAAGAGTTTGAAAAGGCTCGCGGAGCATGAAGAGTCCTTCCACATATCCAAGAGGATCAAAAAGGGTAGCACCACCACCGAGTGTGGTGACAACTTTTGGTTTCAGCCAGGCTTGGAGAGTAACGCCACTACTTTAGGAGGGCTTAACACTTCACTACCTTTCTCTTCGGAAGAAGAGAGAGTCTGTTTTGTTCCTTCTGAAGTGGTGTCTCATTCTTCCCCTTTGCCTTTAAACCCTTGGCTGGAATCATGTGTGACCAAGATAACAAATTTCGGTGAGGGTAGCCAGcatcctcctccacctcctcatcatcatcatcCAAGAGAAGGTTCAGTCTCCAACGCTTCTTCAGAGAGCCAAGGGCTGAGCCTGAGAGTAAACGACAACGTATCAGAACATGAAGTGGGAAACGGTTCAGGGAATCCTTACCATCAGCACCaggaggtggtggagacaggggaggaggaggaTCATCACGGGTTCGAGCTTGTAAGCTTGTTAACCGGCTGCGTGGATGCAATAGTGTCGAGAAACGTGAGCGCAATCAACCACTTCATAGGAAAACTGGGTGATTTAGCTTCTCCAAAGGGAAGCTCCATAAGCCGCATATGCGCTTACTTCACAGAAGCATTAGCCATTCGAGTGACAAGGGTTTGGCCTCATGTTTTTCACATCAGCACCACTTCTCGGGACATGGTGGATGAAGAGGAAAACGGCACCGCATTGAGGCTTCTGAACCAGGTGACGCCCATTCCCAAGTTTCTTCACTTCACATCGAACGAGATGCTGCTGAGGGCTTTCGAAGGGAAAGACAGGGTTCACATAATAGACTTCGACATCAAGCAAGGTCTCCAATGGCCTAGCCTGTTCCAGAGCCTAGCTTCGAGGACAAACCCTCCGAGTCACGTGAGAATCACGGGGATAGGCGAGTCAAAGCAGGAACTGAACGAGACCGGAGACAGACTGTCGGGTTTCGCGGAAGCGTTAAACCTGCCCTTCGAGTTTCACCCAGTGGTGGACAGACTGGAGGACGTGAGGCTGTGGATGCTGCACGTGAAGGAGAACGAAACGGTGGCGGTGAACTGCGTTTTGCAGCTGCACAAGACGCTCTACGACGGGAGCGGAGGAGCATTGCGGGACTTCCTGGGGCTGATTCGCAGCACAAACCCTAGCGTGGTTGTGATGGCGGAGCAAGAGGCGGAGCACAACGAGGCGAGGTTGGAGGCTAGGGTTTGCAACTCGTTGAAATACTACTCGGCGGTGTTCGATTGCATCGAGGAGAGTGGGGTTGGAGAGGAGAGTGCGGTGAGGGCGAAGGTAGAGGAGATGTACGGGAAGGAGATACGGAACATAGTGGCGTGTGAGGGGAGGGAGAGGTTGGAGAGGCACGAGGGGTTCGACAAATGGAGGAGGATGATGGTGGAGCAGGGAGGGTTGAGATGCGTGGGGGTTTCGGATAGGGAGATGAGTCAGAGCGAGTTTCTGGTGAAGATGTACGCGTGCCAGAGTTACCGTGTGACCAAGCAGGAGAAGGAGGGAGCTACTGGGCTTACGCTTTCTTGGTTGGACCAACCTTTGTACACTGTTTCCGCTTGGGTGCCGGTTCATGTTCATGTTGCGCTTGCGGCGGGTACCTCTTCCTCTTTTTCTCAACCACCTTCATAG 1977 0.5129 MLAGCSSSTLLSPRHRLRSEASAQFQACHFQMNTQRLDLPCTTTFPRKDTSSRSQPLRPVGLSVEKPLESKTSTCSLKHNIRLPPLATTAAPTPLGAERESIKDKSLKRLAEHEESFHISKRIKKGSTTTECGDNFWFQPGLESNATTLGGLNTSLPFSSEEERVCFVPSEVVSHSSPLPLNPWLESCVTKITNFGEGSQHPPPPPHHHHPREGSVSNASSESQGLSLRVNDNVSEHEVGNGSGNPYHQHQEVVETGEEEDHHGFELVSLLTGCVDAIVSRNVSAINHFIGKLGDLASPKGSSISRICAYFTEALAIRVTRVWPHVFHISTTSRDMVDEEENGTALRLLNQVTPIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKENETVAVNCVLQLHKTLYDGSGGALRDFLGLIRSTNPSVVVMAEQEAEHNEARLEARVCNSLKYYSAVFDCIEESGVGEESAVRAKVEEMYGKEIRNIVACEGRERLERHEGFDKWRRMMVEQGGLRCVGVSDREMSQSEFLVKMYACQSYRVTKQEKEGATGLTLSWLDQPLYTVSAWVPVHVHVALAAGTSSSFSQPPS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01705 658 PANTHER SCARECROW-LIKE PROTEIN 28 6 641 IPR030027 -
Cca11g01705 658 MobiDBLite consensus disorder prediction 195 227 - -
Cca11g01705 658 ProSiteProfiles GRAS family profile. 258 637 IPR005202 -
Cca11g01705 658 Pfam GRAS domain family 267 636 IPR005202 -
Cca11g01705 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 641 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01705 Cca-Chr11 41474842 41476818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01705 1 637 GRAS Transcription Factor Family AT1G63100 55.965 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g01705 GRAS 2.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01705 - - gmx:100786173 974.156