Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01699 ATGGCATCATCATCGTCATCGTCGAAGAGGCACCCAATGTACCACGGAATCCGGTGCCGCGGAGGAAAATGGGTAACCGAAATCCGTGAGCCACGTAAGACAAACCGCATATGGCTGGGGACGTTCCGGACGCCGGAGATGGCGGCTGCGGCCTACGACGTGGCGGCGCTGGCTCTGAAAGGCGGCGAAGCAGTTCTCAACTTCCCTGACTGGGTTGGCAGGTACCCGGTTCCCGCCTCCAAATCCCCTGAGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCAACCACAACAATGTTAATGCATCCACAACTAACGCAGCAGTTGAGTCTGTTCCTTCGTTTGAAACTCAGTTTCTGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGCATGACATGGCTGAGGGAATGCTGCTATCCCCTCCCAGAATGACTCCACACTTCGATGACTCCTTCGAATATTGTGCTGGAGAAAATTTGTGGAACTTTTGA 519 0.5434 MASSSSSSKRHPMYHGIRCRGGKWVTEIREPRKTNRIWLGTFRTPEMAAAAYDVAALALKGGEAVLNFPDWVGRYPVPASKSPEDIRTAAIAAAELMKPEASNHNNVNASTTNAAVESVPSFETQFLDEEAIFSMPSLLHDMAEGMLLSPPRMTPHFDDSFEYCAGENLWNF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01699 172 CDD AP2 14 70 IPR001471 GO:0003700|GO:0006355
Cca11g01699 172 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Cca11g01699 172 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Cca11g01699 172 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Cca11g01699 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 172 - -
Cca11g01699 172 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Cca11g01699 172 PANTHER ETHYLENE RESPONSE FACTOR 1 172 - -
Cca11g01699 172 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01699 Cca-Chr11 41362650 41364314 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01699 3 172 AP2-EREBP Transcription Factor Family AT5G52020 52.247 9.78e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g01699 AP2 9.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01699 - - gmx:100778793 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01699 11 41362650 41364314 Cca11g01699 11 41362650 41364314 ECH
Cca11g01699 11 41362650 41364314 Cca06g01767 06 32995081 32995779 PCT