Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01697 ATGAATAACTTGGGACAAACATTTGACAAGTGGAACAACATGTGCTACTCTTGTTCCTCGCCGGAAACAAGCTCCTCCAGCCCACCAACCAGCGCTCACTCCGACGAGGACCTTCACGCATTGGCGTCGGCGCGGCCCAAGAAGCGGGCGGGGCGCCGAATCTTCAAGGAGACGAGGCACCCCGTGTACCGCGGAGTGCGGCGGAGGAACAACAACAAGTGGGTGTGCGAGGTTCGCGTTCCCAACGACAAGTCCACCAGGATCTGGCTCGGAACGTACCCCACGCCGGAGATGGCCGCACGTGCGCACGACGTCGCCGCGCTCGCGCTTCGAGGCAAGTTTGCGTGCCTCAACTTCGCCGACTCCGCTTGGCGGCTGCCGCTTCCCGCGTCCACCAATGCCAAGGAGATTCGGCGAGTGGCGGCGGAGGCTGCTGTGGCGGTTGCTGCTGAAGACAGTTGCGGCAATTCGCATGCCGTTGCCGATTGCGAAGCTAGCAGCAGTGACGTTAGCGTTGCTGAAGATGAAGataataataataataataataataataaAGCTCTGCGGGGGTTTTGTGATTTGGATGAAATTACGATGCCGGATGCGTCGGGTTTTGCGGACATGCATGAGTGGCTTCGGAGTATGGCGGAAGAGCCTCTGCGATCGCCTACTTTTGTTACGTATGTTAGGGACTGGAACTTTGTAGAGGATGATGCTGAGGTTTCCCTGTGGAACTTCACCATCTGA 747 0.5649 MNNLGQTFDKWNNMCYSCSSPETSSSSPPTSAHSDEDLHALASARPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKFACLNFADSAWRLPLPASTNAKEIRRVAAEAAVAVAAEDSCGNSHAVADCEASSSDVSVAEDEDNNNNNNNNKALRGFCDLDEITMPDASGFADMHEWLRSMAEEPLRSPTFVTYVRDWNFVEDDAEVSLWNFTI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01697 248 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Cca11g01697 248 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 248 IPR045277 GO:0003700
Cca11g01697 248 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Cca11g01697 248 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Cca11g01697 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01697 Cca-Chr11 41326896 41327919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01697 41 246 AP2-EREBP Transcription Factor Family AT1G12610 47.664 6.72e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g01697 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01697 - - pvu:PHAVU_003G212800g 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01697 11 41326896 41327919 Cca11g01697 11 41326896 41327919 ECH
Cca11g01697 11 41326896 41327919 Cca06g01766 06 32976608 32977504 PCT