Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01690 ATGCAAGAAGCAGCAGCCTTGGGAATGATGGGTGGAGAACTGTCGGACCACCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCACCCACTTTACGACCAGCTTCTCGCTGCACACGTCTCATGCCTCCGCGTCGCCACACCCATCGATCAGTTACCACTCATCGACGCTCAGTTATCGCAGTCCCACCATCTCCTACGCTCCTACGCCTCCCTCCATTCCCACTCCCTCTCTCCTCATGACCGACAACAACTTGACAACTTCATGACACAATATTTGATTGTCTTGTGTTCCTTCAAAGAACAGCTTCAGCAACATGTCAGAGTGCATGCCGTGGAGGCTGTCATGGCCTGCCGTGACATTGAAAGTACCTTCCAAGCTCTGACAGgagTGAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTTCAGATGGATGGATCTTTAGATCAGTGTAGCGCTGATGGGCAGGACATGATGGGATTTGGTCCATTACTTCCTACTGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTTAAGATTGAACTCAAACAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGAAAACGAAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAACAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAACTGGTTCATCAACCAAAGGAAACGCAACTGGCATAGCAACTCTCAATCGGTCACCTCTTTGAAGTCCAAGCGCAAGAGAGAGTATTCCCACTAA 864 0.4792 MQEAAALGMMGGELSDHHHRQVKAEIATHPLYDQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYASLHSHSLSPHDRQQLDNFMTQYLIVLCSFKEQLQQHVRVHAVEAVMACRDIESTFQALTGVSLGEGTGATMSDDEDDFQMDGSLDQCSADGQDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01690 287 SMART KNOX2_2 75 130 IPR005541 GO:0003677|GO:0005634
Cca11g01690 287 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Cca11g01690 287 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 12 283 - -
Cca11g01690 287 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Cca11g01690 287 SMART HOX_1 208 273 IPR001356 GO:0003677
Cca11g01690 287 Pfam KNOX2 domain 78 129 IPR005541 GO:0003677|GO:0005634
Cca11g01690 287 Pfam KNOX1 domain 22 63 IPR005540 GO:0003677|GO:0005634
Cca11g01690 287 SUPERFAMILY Homeodomain-like 208 273 IPR009057 -
Cca11g01690 287 Gene3D - 205 280 - -
Cca11g01690 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 283 - -
Cca11g01690 287 SMART KNOX1_2 20 64 IPR005540 GO:0003677|GO:0005634
Cca11g01690 287 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Cca11g01690 287 CDD homeodomain 209 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01690 Cca-Chr11 41203835 41209855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01690 1 282 Homeobox Transcription Factor Family AT1G62990 76.451 7.59e-164 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca11g01690 KNOX2 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01690 - - gmx:100803130 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01690 11 41203835 41209855 Cca11g01690 11 41203835 41209855 ECH
Cca11g01690 11 41203835 41209855 Cca06g01756 06 32844201 32850187 PCT