Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01689 ATGCTGTCGTATCAAATCAGTGGTAGCTCAGAAACTTTTAATGCTCTTGTCCATTGGAGATGCTCCAGTATAAACAAAACAGTTGAACGATATCAAAGGAAAATCAAGGACCAGGGTGTCAGCAACAAAGGAATCCATGAAAACACACAGCCTCCGAAGGAAGGTGATGTCAGGATGGCAACGAAGATCGAGCACCTAGAAGTTTCCAGAAGGAAGCTTTTGGGTGATGAATTGGATACGTGTTGTATTTACGAGTTACAACAGCTAGAGAATCAGATCGAAAGCAGCCTCAACAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCGAATTGAGAAGCTAAAAGATGAGGAACGGTGCTTACTCGAAGTAAATAAACGCTTACGGGACCAGTATCGGATGCAACAACAGCGTTCTTGGAGCGATGAGGATGTGGAACTCTTCACAGAAAAAGGGGGAGAAGAGGTAGAGACGGAGTTATTCATAGGGAGACCAGAGAGAAGAATGCCATTAAAGTTGAAACCTGGAACACATTGTGCTAATAAAACATACATAGCCAAATAA 567 0.4233 MLSYQISGSSETFNALVHWRCSSINKTVERYQRKIKDQGVSNKGIHENTQPPKEGDVRMATKIEHLEVSRRKLLGDELDTCCIYELQQLENQIESSLNKIRARKNQLFRERIEKLKDEERCLLEVNKRLRDQYRMQQQRSWSDEDVELFTEKGGEEVETELFIGRPERRMPLKLKPGTHCANKTYIAK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01689 188 Pfam K-box region 58 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca11g01689 188 Coils Coil 86 106 - -
Cca11g01689 188 PANTHER MADS BOX PROTEIN 22 170 - -
Cca11g01689 188 Coils Coil 112 132 - -
Cca11g01689 188 PANTHER - 22 170 - -
Cca11g01689 188 ProSiteProfiles K-box domain profile. 49 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01689 Cca-Chr11 41171627 41177397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01689 16 176 MADS-box Gene Family AT4G22950 44.848 2.52e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01689 - - gmx:100805260 249.98