Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01687 ATGGCTGCAATGCTTCAACATTGTAGCATCTTGTTGATTACGTTTATAATCATCGGAAAGGCAGCAATAGTAGCAGGCACATTTCAGCCTAGTCCATGGACTCTTGCCCAAGCCACATTTTATGGTGATGACACTGCTTCTGCCACAATGGGAGGAGCATGTGGGTACGGGAATTTGTTCATAAACGGTTACGGGACAGACACAGTGGCTTTGAGTTCAACGTTGTTCAATAACGGGTATGCATGTGGTACTTGTTACCAGATTAAGTGTGTCCAATCGAGTGCATGCGACTCCACTGTGCCTTACACTACAGTAACTGCCACCAATCTTTGCCCTCCTAATTGGGCCGAGGCCTCTGATAACGGAGGCTGGTGCAACCCACCACGCGAACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAATGGAAAGCCGGAATCATTCCTGTAATGTACCGCAGAGTACCTTGTGTGAAGAGTGGGGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTGTTGGTGTACGTGATGAATGTGGGAGGTGGTGGAGATATTGCTAACATGTGGGTGAAAGGAAGTGGAACAAGGTGGATTAGCATGAGCCACAATTGGGGGGCTTCATACCAAGCATTTGCATCACTGGGTGGTCAAACTCTTTCTTTTAAGGGAGGGTTTGGTGGCCATGACATGTGCTATGCTACCATAGCTGTGGGATTAGAGCAGCATTGGGTTGCTTATGGAGGTGCATCAATGATTATTATTTGTGTTGGTGGTGAAGGGAGGGTTTGGTGGCCTGTGGCCAAGACATGTGTGCAATGCTACCATTACATTATGGTTACGTAG 855 0.4713 MAAMLQHCSILLITFIIIGKAAIVAGTFQPSPWTLAQATFYGDDTASATMGGACGYGNLFINGYGTDTVALSSTLFNNGYACGTCYQIKCVQSSACDSTVPYTTVTATNLCPPNWAEASDNGGWCNPPREHFDMSKPAFMKIAQWKAGIIPVMYRRVPCVKSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTRWISMSHNWGASYQAFASLGGQTLSFKGGFGGHDMCYATIAVGLEQHWVAYGGASMIIICVGGEGRVWWPVAKTCVQCYHYIMVT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01687 284 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cca11g01687 284 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cca11g01687 284 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cca11g01687 284 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cca11g01687 284 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cca11g01687 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 226 IPR007117 -
Cca11g01687 284 Pfam Lytic transglycolase 68 154 IPR009009 -
Cca11g01687 284 SMART dpbb_1 68 154 IPR007112 -
Cca11g01687 284 Gene3D - 20 159 IPR036908 -
Cca11g01687 284 PANTHER EXPANSIN 2 226 - -
Cca11g01687 284 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cca11g01687 284 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cca11g01687 284 SUPERFAMILY PHL pollen allergen 161 227 IPR036749 -
Cca11g01687 284 Gene3D - 165 246 IPR036749 -
Cca11g01687 284 Pfam Expansin C-terminal domain 166 226 IPR007117 -
Cca11g01687 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cca11g01687 284 PANTHER EXPANSIN-A15 2 226 IPR002963 GO:0009664
Cca11g01687 284 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01687 Cca-Chr11 41147567 41149663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01687 9 226 Expansin Gene Family AT1G12560 67.890 8.40e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01687 - - gmx:100781459 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01687 11 41147567 41149663 Cca11g01687 11 41147567 41149663 ECH
Cca11g01687 11 41147567 41149663 Cca06g01751 06 32794906 32796787 PCT