Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01684 ATGGATTCCTTCTTTTTCATCGCTCTCACTTTCGTGTTGAGCTTCCATTTTGCTCATGGAAaagtattagggaatgccaaaggcacagcagcagggattgccccttatgctcacctggcAGTGTACAGAGTTTGCTTTGGAGACCACTGCCCTGAGAGTGATATATTGGCAGCATTGGATGCAGCTGTGGAGGATGGCGTGGATGTAATATCAATATCCCTCGGCCTAAGGGAGCCAGCACCTTTTTTCAATGATAGCGCTGCAATAGGCGCATTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTGCAGCAGGAAACTTTGGCCCTTTTCATGGCTCATTAGTTAACGGGGCCCCTTGGATTCTCACAGTTGGAGCAAGCACTATTGACAGAAGCATCGCAGCAACAGCAAAGCTGGGAAATGGGCAAGAATTTGATGGGGAATCTGTTTTCCAGCCTTCCAATTTTAATCAAGAACTGCTATCCTTAGCATATGCTGGAAAGAATGGCAAACAAGAAGCAGCATTTTGTGCTACTGGATCCTTGAGTGATGTTGATTTCATAGGCAAGGTTGTTTTGTGTGAGAGAGGAGCGGGTACAGGAAGACTTGCCAAAGGAGAGGAAGTAAAAAGAGCAGGTGGTGCAGCCATGATTCTCATGAATGATGAAACCAATGGCTTCAGTCTCCCAGCTGATGTACATGCTCTACCTGCAACACAAGTAAGCTACGATGCTGGACTTAAGATCAAAGCCTACATAAATTCCACTGCAACACCTACAGCAACCATTTTATTCAAGGGAACTATAATTGGAAACTCCCAATCTCCTGCTGTTTCATCCTTCTCTTCAAGAGGTCCCAACTTGCCAAGTCCTGGCATTTTGAAACCAGACATCATAGGACCAGGCGTGAACATCCTAGCTGCCTGGCCATTCCCCCTGAATAACAGCACAGATTCAAAATCCACTTTCAACATTATGTCTGGTACATCAATGTCATGCCCACATCTCAGCGGCGTAGCTGCTTTGCTCAAAAGCTCTCATCCTCACTGGTCGCCAGCTGCCATAAAATCTGCCATAATGACTTCTGCAGACATAGTCAATTTTGAACAGAAACTCATTGTCGATGAAACACTTGGCCCTGCAGATATCTTTGCCACAGGTTCTGGTCATGTTAATCCATCAAGAGCAAATGACCCCGGGTTAGTTTATGATATCGCGCCTGATGATTACATACCTTATCTGTGTGGCTTAGGCTACGGTGATACGGAAGTTGGGATCATTGCACACAGAGCAATTAAGTGCTCTGAGACTTCAAGCATTCCTGAAGGAGAACTCAACTATCCCTCATTTTCGGTTGTGCTTGGTTCCCCACAGACATTCACAAGGACTGTGACAAATGTGGGGGATGCCAACTCATCGTATGTTGTCATGGTTACGGAACCAAAAGGGGTTGTTGTTAAGGTGCAACCAAATAAACTTTATTTTTCAGAAGCGAACCAGAAAGAGACATATTCAGTGTCATTCAGCCGTATAGGGTCGGGTAATGAAACTGCAGAATATGCTCAAGGGTTTTTACAATGGGTCTCTGCCAAACACACTGTAAGGAGCCCTATCTTGGTCATTTTTTCATAA 1635 0.4318 MDSFFFIALTFVLSFHFAHGKVLGNAKGTAAGIAPYAHLAVYRVCFGDHCPESDILAALDAAVEDGVDVISISLGLREPAPFFNDSAAIGAFAAMQKGIFVSCAAGNFGPFHGSLVNGAPWILTVGASTIDRSIAATAKLGNGQEFDGESVFQPSNFNQELLSLAYAGKNGKQEAAFCATGSLSDVDFIGKVVLCERGAGTGRLAKGEEVKRAGGAAMILMNDETNGFSLPADVHALPATQVSYDAGLKIKAYINSTATPTATILFKGTIIGNSQSPAVSSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNSTDSKSTFNIMSGTSMSCPHLSGVAALLKSSHPHWSPAAIKSAIMTSADIVNFEQKLIVDETLGPADIFATGSGHVNPSRANDPGLVYDIAPDDYIPYLCGLGYGDTEVGIIAHRAIKCSETSSIPEGELNYPSFSVVLGSPQTFTRTVTNVGDANSSYVVMVTEPKGVVVKVQPNKLYFSEANQKETYSVSFSRIGSGNETAEYAQGFLQWVSAKHTVRSPILVIFS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01684 544 Gene3D - 131 272 - -
Cca11g01684 544 Pfam Fibronectin type-III domain 445 541 IPR041469 -
Cca11g01684 544 SUPERFAMILY Subtilisin-like 26 402 IPR036852 GO:0004252|GO:0006508
Cca11g01684 544 Gene3D - 415 543 - -
Cca11g01684 544 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 21 542 - -
Cca11g01684 544 CDD PA_subtilisin_like 137 264 - -
Cca11g01684 544 Pfam Subtilase family 24 365 IPR000209 GO:0006508|GO:0008236
Cca11g01684 544 Pfam PA domain 172 250 IPR003137 -
Cca11g01684 544 Gene3D Peptidase S8/S53 domain 21 411 IPR036852 GO:0004252|GO:0006508
Cca11g01684 544 ProSiteProfiles Serine proteases, subtilase domain profile. 1 398 - -
Cca11g01684 544 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 542 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01684 Cca-Chr11 41131818 41134133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01684 22 543 Subtilisin-like Serine Gene Family AT1G04110 47.955 3.77e-161 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01684 - - gmx:100812208 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01684 11 41131818 41134133 Cca11g01684 11 41131818 41134133 ECH
Cca11g01684 11 41131818 41134133 Cca06g01747 06 32761029 32763967 PCT