Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01679 ATGGGTCGTATGCACAGTCGCGGTAAGGGTATATCCTCATCTGCTTTGCCCTACAAGAGGACACCTCCAAGCTGGCTCAAGATCTCTTCACAAGATGTGGAAGAAAACATCTGCAAGTTTGTGAAGAAGGGTTTGACCCCATCTCAGATTGGTGTCATTCTTCGAGATTCTCACGGTATTGCCCAGGTCAAGAGCGTCACTGGCAGCAAAATCCTGCGAATCCTCAAAGCTCATGGACTTGCGCCTGAGATTCCAGAGGATCTGTACCATTTGATTAAGAAGGCAGTTTCAATAAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCGAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACCGTCTTGCTCGATACTACAAGAAGACTAAGAAGCTCCCACCAGTCTGGAAGTACGAATCAACAACTGCTAGCACTTTGGTTGCTTAG 456 0.4715 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFVKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01679 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Cca11g01679 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
Cca11g01679 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 Gene3D - 83 151 - -
Cca11g01679 151 PANTHER 40S RIBOSOMAL PROTEIN S13 1 151 - -
Cca11g01679 151 Gene3D - 35 82 - -
Cca11g01679 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cca11g01679 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01679 Cca-Chr11 40980755 40982800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01679 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.377 1.41e-102 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01679 K02953 - egr:104442247 298.901