Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01677 ATGAATTTCCTTAATCTTTTCCTTCCTCTGTGTCTATTGGTTTTGGTTGCATTTTCCATTCCACAGATGGTTCATGGAAATGCAGAGCTAAGAGCTCTCATGGACTTGAAATCCTCTCTGGACCCAGAAGACAAGTTCCTTGGCTCATGGACCCGTGATGGTGATCCATGCAGTGGTTCATTCTTGGGGGTTGAGTGCAACGAGCACAACAAAGTGGCTAATATATCATTGCCAGGAAGGGGTCTTTCTGGTCGTGTCTCTCCAGCTGTGGCTGAACTCAAATGTTTGTCAGGTTTATTCTTGCATTACAACAATCTCTCTGGAGACATACCCAGAGAGATTGCAAATCTTAAAGAATTGTTGGATCTCTATCTCAATTTTAATAATCTATCTGGAACCATTCCTCCTGGTATTGGGAACATGACTAGCCTCCAAGTGCTGCAGTTAGGCTATAACCAGTTAGAGGGGAACATACCTGAGCAACTGGGTTTGTTGAAGCAGCTTAATGCTGTTGCTTTGCAGCACAACAAATTAACTGGTCAAATTCCTCTCAGCTTGGGTAACTTGGAGAAGCTAAGGAGGCTAAATTTGAGCTACAACAAATTCAATGGCATCATCCCTGCAACACTAGCTGATATTGCCAACTTGGAAGTTCTAGATGTGCGAAACAATTCTCTTTTGGGGACTGTTCCTTCTGCATTGAAGAGATTAAAAGAAGGGTTCCAAGGTGCAAACAACCGAGATCTTTGTGGAGAGGGGTTTTCTAATTTGAAAGCTTGTAACAAAGATAAAACATTTGACGTTAGTCAGATTAGTGCCCCAAATATATCCATAAACAGAAATCATCCAATAACTTTCCCGAAGCCTGAAAATACGTTGCATTGTAACCAGACCCTTTGCTCAAAATCAAGAGGGTTTCTTCATGTTATCATTGCAGCAAGTGTTACAACCACTACTATCACATTGATTGGTTTTGGAACTTTCATATTTGTCATATATCGCCGTCAAAGGCAGAGGGTTAGGAACACATCAGATTATTCTGAAGGCCAACTTAGTCCTTACCAATACCAGCCTAAAGAGTTCTACAGAAGTTCGTCTCCACTTGTTAATCTTGAGTATTTGTATAATGATTGGGATTCACTTGATGGTCAAAATGCCAGTGGATTATCCCATGAATATTTGAACCGTTTTAGATTTAATATTGATGAGATTGAATCAGCAACACAGCACCTTTCTGAGTCCAGCTTATTGGGTAAGAGCAAATTCTCCGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAGTGTGACTTACTGCAAAACCGAGGAAGTTGAATTTCTGAAGGGCTTGACCCTATTAACCTCACTGAGACATGAAAACATTGTTAAGATGAAAGGTTTCTGTTTCTCAAGAAGTAGAGGTGAGTGGTTTTTTGTCTATGACTTTGCCACCAAAGGTAATCTGTCACAATATCTGGACAAAGAAGATGGAAGTGACCATGTACTTGAATGGTCCAAGAGGGTTTCTATCATCAGGGGTATTGCAAAAGGTATTTGTTATCTGCACAACAATGAAGCAAGCAAGCCTACAATAGTACACCAAAATATTTCAGTTGAAAAGGTTATTCTTGACCATGAATTTAACCCCTTGATCATGGATGCTGGCCTCCCCAAGCTTCTTGCGAATGATGTTGTTTTCTCAGCTCTTAAAGCGAGTGCTGCCATGGGATACCTGGCTCCTGAATATATCACTACTGGACGCTTCACAGAGAAGAGTGACATATATGCATTTGGGGTTATTGTTCTTCAACTTCTATCTGGAAAGACATTGATAGGGGGTTCAATCCGGGTGGCAGTTGAATCTTTCAGATTTGAAGATTTTGTTGACTCAAATCTGAAGGGAGATTATTCAAAATCCGAAGCTGCAATTCTTTCAAAGCTTGCAATTCTGTGCACCCATGAAGTGCCAGAGCAAAGGCCAACCATGGTGGAGGTGATTCAGGAGTTGACCATGTTTCCTGCTCATTCTTCATGA 2055 0.4092 MNFLNLFLPLCLLVLVAFSIPQMVHGNAELRALMDLKSSLDPEDKFLGSWTRDGDPCSGSFLGVECNEHNKVANISLPGRGLSGRVSPAVAELKCLSGLFLHYNNLSGDIPREIANLKELLDLYLNFNNLSGTIPPGIGNMTSLQVLQLGYNQLEGNIPEQLGLLKQLNAVALQHNKLTGQIPLSLGNLEKLRRLNLSYNKFNGIIPATLADIANLEVLDVRNNSLLGTVPSALKRLKEGFQGANNRDLCGEGFSNLKACNKDKTFDVSQISAPNISINRNHPITFPKPENTLHCNQTLCSKSRGFLHVIIAASVTTTTITLIGFGTFIFVIYRRQRQRVRNTSDYSEGQLSPYQYQPKEFYRSSSPLVNLEYLYNDWDSLDGQNASGLSHEYLNRFRFNIDEIESATQHLSESSLLGKSKFSAVYKGVLRDGSLVAIRSISVTYCKTEEVEFLKGLTLLTSLRHENIVKMKGFCFSRSRGEWFFVYDFATKGNLSQYLDKEDGSDHVLEWSKRVSIIRGIAKGICYLHNNEASKPTIVHQNISVEKVILDHEFNPLIMDAGLPKLLANDVVFSALKASAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQLLSGKTLIGGSIRVAVESFRFEDFVDSNLKGDYSKSEAAILSKLAILCTHEVPEQRPTMVEVIQELTMFPAHSS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01677 684 Gene3D Ribonuclease Inhibitor 26 303 IPR032675 -
Cca11g01677 684 PANTHER LEUCINE RICH REPEAT KINASE 2 11 678 - -
Cca11g01677 684 Pfam Protein tyrosine and serine/threonine kinase 414 676 IPR001245 GO:0004672|GO:0006468
Cca11g01677 684 Gene3D Transferase(Phosphotransferase) domain 1 491 680 - -
Cca11g01677 684 SUPERFAMILY Protein kinase-like (PK-like) 387 679 IPR011009 -
Cca11g01677 684 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cca11g01677 684 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 4-LIKE 11 678 - -
Cca11g01677 684 SMART LRR_typ_2 189 212 IPR003591 -
Cca11g01677 684 SMART LRR_typ_2 141 165 IPR003591 -
Cca11g01677 684 SMART LRR_typ_2 117 140 IPR003591 -
Cca11g01677 684 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Cca11g01677 684 SUPERFAMILY L domain-like 29 237 - -
Cca11g01677 684 ProSiteProfiles Protein kinase domain profile. 411 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01677 684 Gene3D Phosphorylase Kinase; domain 1 380 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01677 Cca-Chr11 40959768 40962980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01677 10 524 Miscellaneous Gene Families AT4G22730 54.802 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Cca11g01677 PK_Tyr_Ser-Thr 1.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01677 - - gmx:100784155 1105.51