Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01665 ATGGAGGCCAGTGGCGGTGTTAGCGGCGGTGTTACGGTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGAAAACCCGGCTCCGGCCGGCGGATCCACGACGCAGATTCCGGCGACGGCGGGGAGTGCTCAGCCGCCGCCACATCCGCCGCACACGGCGGCGACGGAGGTGTCTCCGGCGACGATGCCCGCGAAGAAGAAGAGGGGCCGGCCGAGAAAGTATGCACCGGATGGGTCGGTGGCCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCCCCGTTGCCGCCGGTGATCGATTTCTCGGTGGAGAAGCGTGGAAAAATAAAGCCAACCAGCTCTGTCAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGTGAGGATGTTACTATGAAGGTTATATCGTTTTCTCAGCAAGGGCCACGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAGTGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTATCTCTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTTTTAGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAGGTGATATCAAGTGTGACACCAACTGCAGTTGTTCCAATCTCTACCCTTGATCCAATACCAATTCTATCAGCAGCAGCAACCACCATCCGCGGTGAAAATTGGTCTGCTATGCCGTCAGAGGCCAAGAATAAGCCAACTGACATTAACGTGTCACTTCCTGCAGGGTAA 987 0.5299 MEASGGVSGGVTVVGSDAPSDYHVAPRTENPAPAGGSTTQIPATAGSAQPPPHPPHTAATEVSPATMPAKKKRGRPRKYAPDGSVAMALSPKPISSSAPLPPVIDFSVEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPTAVVPISTLDPIPILSAAATTIRGENWSAMPSEAKNKPTDINVSLPAG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01665 328 Gene3D - 144 276 - -
Cca11g01665 328 MobiDBLite consensus disorder prediction 1 94 - -
Cca11g01665 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 326 IPR039605 GO:0003680
Cca11g01665 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 260 - -
Cca11g01665 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 326 - -
Cca11g01665 328 MobiDBLite consensus disorder prediction 32 46 - -
Cca11g01665 328 CDD DUF296 143 234 IPR005175 -
Cca11g01665 328 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
Cca11g01665 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01665 Cca-Chr11 40717362 40723599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01665 1 325 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.040 5.27e-132 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01665 - - gmx:100794202 563.148