Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01661 ATGGATCCAAACTCAGCACATGCCCACTCTCTCCCCCCTCCTTTTCACACAAGGGATCTGcacctgcaccaccaccagcagcaacaccaattccaagccaccgaggacgagcacagcGGAAGCAACGGGGCGCAGAAAAGGGAGCGCGAAGAAAACAACGAAGGTGCAGGTGAGGCTGAGATAACAAGAAGGCCTCGAGGAAGACCAGCGGGGTCCAAAAACAAGCCCAAGCCACCCATTATCATCACCCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGCGTGCGACATCGTGGAAAGCGTGTCGGAGTTCGCAAGGAAGCGCCAGAGAGGGGTTTGCATCTTGAGCGGCACCGGAACTGTCACCAACGTCACTCTCAGGCAACCGGCTTCTCCCGGTTCCGTCGTTACCCTCCACGGAAGGTTCGAGATCTTGTCCCTCTCGGGGTCCTTCCTTCCGCCGCCGGCGCCACCGGCTGCTTCCGGTTTGACCATTTACCTGGCCGGTGGGCAGGGCCAGGTGGTGGGAGGAAGCGTGGTTGGAACGCTGGTTGCTTCGGGGCCTGTGGTGATCATGGCTGCTTCGTTCAGCAACGCTGCTTACGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCTTTGCCAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGGTGTTGCTCAGTCACAGCTTATGGGAGGAGATAATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAATCTTCTCAATTCCGTTCAAATGCCTTCTGACCCGCCTTTCTGGGCTCAGAATCGTTCACCTTTCTAA 834 0.5288 MDPNSAHAHSLPPPFHTRDLHLHHHQQQHQFQATEDEHSGSNGAQKREREENNEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADACDIVESVSEFARKRQRGVCILSGTGTVTNVTLRQPASPGSVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLPMQGGSIGSPGASGVAQSQLMGGDNATAPLFHGLPPNLLNSVQMPSDPPFWAQNRSPF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01661 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 6 277 - -
Cca11g01661 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 218 - -
Cca11g01661 277 MobiDBLite consensus disorder prediction 40 67 - -
Cca11g01661 277 Gene3D - 90 218 - -
Cca11g01661 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 277 IPR014476 GO:0003680
Cca11g01661 277 MobiDBLite consensus disorder prediction 14 32 - -
Cca11g01661 277 CDD DUF296 91 202 IPR005175 -
Cca11g01661 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
Cca11g01661 277 PIRSF ESCAROLA 8 277 IPR014476 GO:0003680
Cca11g01661 277 ProSiteProfiles PPC domain profile profile. 87 225 IPR005175 -
Cca11g01661 277 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01661 Cca-Chr11 40626793 40628695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01661 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 55.287 8.09e-85 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01661 - - gmx:100807581 439.884