Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01660 ATGGCATTGTTTGGCTTTTGTCAAAATCTTATTATAGTGCTATTACTTGGACTTGCTCGAAGTTCATGGAAGAGTTGGAGTTGCGCTTATAGCGCAGACAAATCAGTGGCAGATGATGATTTTGTCGACTGTGTGAAGCTGCAGCAAGAGGCTTTGAAGGTGGAAACCATGGTAAAATTAAAGGAGGAAATTGATTACAAAAGTTTGTGTAGAAGGCTAGACATAGAATTGGACAAACTCACTATGGAATATGAAAGGCAGCAGAAAGTATTTGAAGATGATATAGAAAGATTGACCACAGAAGCACAACATCGGATATTAGAGGCCCAAAAAAACTGTTCGGATTCATTGGAGAAGGAAAGATTGAAATATCAGAAAGACTATAAGGAGTCATTTAAGAGGCTTGAAGAGAAGGTGATGGAGAATAGAAAAAAGTATGAGGATTTTTGCATGACTTCTACAAGAGAGATTGCTATGGTGCCTGCTGAGGAACTAGACATTTTGAAAAAAATACTTCATAAAGAGACTTTCCTAAGAACTGCTGCTGAAGAGGAGAGAAATCATCTGAAGAATCAAATGACAGAACTGAAAATGTCGGAGGCATCAAGAGTGTCAAATATATTCAAACTTCGCAAGATGTTGGAAGATGAGACATATCAGAAAGAGAAACTCAAAGGAGAAATAGCAAGATTGCAAAGTCAATTGTTGCAATTAGGTTTTAAAGTTGGCAAAACAAAACAACAAATTGATGGAGGTGGATTTGAAAAAGATGTTGGTGGTGTAGATTCTCCCACTTTCCTAGTTGAGCATCAACAAGAAGCTTCAGGAAACGGGGAGAAAGTCTCAGATGACAAGCTCTATGAGCAAGGGGGATTGCAGAAGATTATGTCATTGCTTGAAGCAGAAGATGCTGATGCACGAATCTCTGCTGTGAAACTAGTAGCAAATTTAGCTTCTGAAGAAACAAATCAGAAGAAGATTGTAGAAGCAGGTGGACTTACGTCCTTGATTAGACTGCTTAAAAACTCACACGATGAAACCACACAGAGAGTTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACCAATCAAGATCTCATTGTGGCTCAAGGAGGCATAAGTTTACTGTCAATGGCAGCAACCAATGCCGAAGATCCTCAGAGCCTTCGAATGGTTGCTGGAGCAATTGCTAATCTTTGTGGAAATGAAAAACTACAAATAAAGCTAAAGGAAGAAGGTGGTATCAAGGCACTGCTGGGAATGGTCAAATGCAGACATCCTGATGTACATACACAAGTTGCACGCGGAATAGCCAACTTCGCCAAGTGTGAGTCAAAAGCATGCACTCAAGGGACAAAGGTTGGAAGGTCTTTACTTATTGAGGACGGTGTGCTTCCGTGGATAGTGCAAAACGCAAACAATGAAGTATTGTTGGTTAGGCGTCATGTTGAGCTTGCACTCTGTCACTTAGCACAACATGGTGAGCACTACATGCACCCTATCTAG 1512 0.4034 MALFGFCQNLIIVLLLGLARSSWKSWSCAYSADKSVADDDFVDCVKLQQEALKVETMVKLKEEIDYKSLCRRLDIELDKLTMEYERQQKVFEDDIERLTTEAQHRILEAQKNCSDSLEKERLKYQKDYKESFKRLEEKVMENRKKYEDFCMTSTREIAMVPAEELDILKKILHKETFLRTAAEEERNHLKNQMTELKMSEASRVSNIFKLRKMLEDETYQKEKLKGEIARLQSQLLQLGFKVGKTKQQIDGGGFEKDVGGVDSPTFLVEHQQEASGNGEKVSDDKLYEQGGLQKIMSLLEAEDADARISAVKLVANLASEETNQKKIVEAGGLTSLIRLLKNSHDETTQRVAASAIANLAMNETNQDLIVAQGGISLLSMAATNAEDPQSLRMVAGAIANLCGNEKLQIKLKEEGGIKALLGMVKCRHPDVHTQVARGIANFAKCESKACTQGTKVGRSLLIEDGVLPWIVQNANNEVLLVRRHVELALCHLAQHGEHYMHPI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01660 503 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 332 IPR000225 GO:0005515
Cca11g01660 503 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 496 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cca11g01660 503 Coils Coil 214 234 - -
Cca11g01660 503 PANTHER KINESIN-RELATED 47 496 IPR027640 GO:0003777|GO:0007018
Cca11g01660 503 Gene3D - 122 501 IPR011989 -
Cca11g01660 503 SMART arm_5 278 319 IPR000225 GO:0005515
Cca11g01660 503 SMART arm_5 404 444 IPR000225 GO:0005515
Cca11g01660 503 SMART arm_5 362 403 IPR000225 GO:0005515
Cca11g01660 503 SMART arm_5 320 361 IPR000225 GO:0005515
Cca11g01660 503 Coils Coil 70 101 - -
Cca11g01660 503 Pfam Armadillo/beta-catenin-like repeat 323 360 IPR000225 GO:0005515
Cca11g01660 503 SUPERFAMILY ARM repeat 284 503 IPR016024 -
Cca11g01660 503 Coils Coil 179 199 - -
Cca11g01660 503 Coils Coil 125 145 - -
Cca11g01660 503 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 331 374 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01660 Cca-Chr11 40612382 40618052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01660 286 428 U-box Gene Family AT1G23030 28.378 3.69e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01660 - - ccaj:109807166 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01660 11 40612382 40618052 Cca11g01660 11 40612382 40618052 ECH