Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01658 ATGAGTTCCCAGAAGAACAATGACACCAGCTACCCACCTTCGGAGCCGAAACCCTGCGCCAACAACTGCGGTTTCTTTGGCACTCCCGAGAACCTAAACCTCTGCTCCCAATGCTACATGGAGCTTTGCATCGAGGAGGAGTTCGAAGACCTAGACTCCATATACGGCAATGTTGTCATGGCGCTTCCTGCGCCCAAGCCATCCTCACCGGTGATGGGCTTGGTTGGACCGTCCACTTCGTCCAAACCGGTAAATCGGTGCTCCATTTGCAATAAGAAGGTGGGGTTGACGGGGTTTGTGTGTAAGTGTGGGAGTACTTTCTGTGGGACGCATCGTTATCCAGAAGAGCACCAGTGCAGTTATGACTTCAAGGCTGCCGGAAAGGAAGAGATTTCCCAGGCGAATCCAGTTGTGAAGTCTGACAAGGTCAAAAGGATTTAG 441 0.5193 MSSQKNNDTSYPPSEPKPCANNCGFFGTPENLNLCSQCYMELCIEEEFEDLDSIYGNVVMALPAPKPSSPVMGLVGPSTSSKPVNRCSICNKKVGLTGFVCKCGSTFCGTHRYPEEHQCSYDFKAAGKEEISQANPVVKSDKVKRI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01658 146 ProSiteProfiles Zinc finger AN1-type profile. 81 127 IPR000058 GO:0008270
Cca11g01658 146 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Cca11g01658 146 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 47 - -
Cca11g01658 146 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 79 146 - -
Cca11g01658 146 Gene3D - 1 57 - -
Cca11g01658 146 SMART AN1_Zf_4 87 124 IPR000058 GO:0008270
Cca11g01658 146 Gene3D - 69 142 IPR035896 -
Cca11g01658 146 SUPERFAMILY AN1-like Zinc finger 78 141 IPR035896 -
Cca11g01658 146 Pfam AN1-like Zinc finger 87 123 IPR000058 GO:0008270
Cca11g01658 146 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 47 - -
Cca11g01658 146 PANTHER AN1-TYPE ZINC FINGER PROTEIN 79 146 - -
Cca11g01658 146 Pfam A20-like zinc finger 18 39 IPR002653 GO:0003677|GO:0008270
Cca11g01658 146 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Cca11g01658 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01658 Cca-Chr11 40576818 40577416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01658 13 146 C2H2 Transcription Factor Family AT3G52800 37.267 1.89e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01658 - - vun:114175511 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01658 11 40576818 40577416 Cca11g01658 11 40576818 40577416 ECH