Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01647 ATGGCAAGAGAGACAGCAAAGAAAGTTTCGATTCCGGAGAAAAGCATGGGAGCGAAAGAACTAAGCTTTTGTTTGGTAATCCTAAACCTGGTCCTTGACGTGTGGGGCAGCCCAGATTTCATAAAGACGGCATGCGAGGTGACGCGGTACCCAGTGGGGTGCGTTCAAAGCCTCTCGAGCCAAGCGAGCAGCATAGGGCAAAGCGATCAACAGCTAGCCCTCACGGCCCTCTCCGTCAGCGCCTCAAGGACCCAATCATGCGCATCGTTCCTCAAGACATTGAGCCAAGCTGACAACGCCGTGCGAGGCTGCGTAGGGAACATAGATGGCAGCGTCGACCGTCTCACCCAATCGGTTAAGGAGCTTGAGCTTGCGGGTAAGCCCAATGAGGATTCAGCGATGCACATTAGTAATGCCCAGACTTGGGTTGGCGTTGCCATCACCGATCAAACCACGTGCCAGGACGCGCTTGATGGGCCCAACATAGATGCCCAATTGAAGGAAGCCGTTAGGCCCAGGGTTATGGATGCTTCTCAAGCCACCAGTAATGCCCTTGCGTTGATTAATCGCTTTGCCACCAAACAAGAAGCTGCACCGCCAATTGGAGCGCCATGA 615 0.5415 MARETAKKVSIPEKSMGAKELSFCLVILNLVLDVWGSPDFIKTACEVTRYPVGCVQSLSSQASSIGQSDQQLALTALSVSASRTQSCASFLKTLSQADNAVRGCVGNIDGSVDRLTQSVKELELAGKPNEDSAMHISNAQTWVGVAITDQTTCQDALDGPNIDAQLKEAVRPRVMDASQATSNALALINRFATKQEAAPPIGAP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01647 204 CDD PMEI-like_3 43 193 - -
Cca11g01647 204 PANTHER PECTINESTERASE INHIBITOR 9 38 195 - -
Cca11g01647 204 TIGRFAM PME_inhib: pectinesterase inhibitor domain 36 189 IPR006501 GO:0004857
Cca11g01647 204 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 191 IPR035513 -
Cca11g01647 204 PANTHER PECTINESTERASE INHIBITOR-LIKE 38 195 - -
Cca11g01647 204 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 191 IPR035513 -
Cca11g01647 204 SMART PMEI_2 36 187 IPR006501 GO:0004857
Cca11g01647 204 Pfam Plant invertase/pectin methylesterase inhibitor 39 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01647 Cca-Chr11 40471235 40472048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01647 41 190 Carbohydrate Esterase AT1G53840 25.926 1.31e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01647 - - ccaj:109807483 391.734