Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01641 ATGAACACATTTTCACATGTACCTCCGGGCTTTCGGTTTCACCCGACCGATGAAGAGCTAGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGAATTGATCTAGATGTCATCAAAGATGTGGATCTCTATAAAATTGAACCATGGGATCTCCAAGAATTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTATTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTGATTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGTCGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTGGAAACTAATGAAAATGGAACTACTCCGGAAGAAGGGTGGGTTGTGTGTAGAGTGTTCAAGAAGAAAATGGCAACAATGCAGAAAGTGGGAGAGTATGATCAGTCACCCTGTTGGTACGATGACCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCATTTCTCAGCCTTATGCATCATACCACCAGCACCAACCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACATACCCCACGATGCTTTTCTCCAACTTCCTCAACTTGAAAGCCCCAAAGTTACTCAATCTGCAGCAAGCTTGAGTTGCAGCTCAGTTGTCCCTTATGGTTATGAAAACAACAACAATGGAAGCACCCTGCAGTTCTCATCACTTACTCAGGAAGAACAGATACAATATTTCCATCAACAAAATAATAACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAAGTGACAGATTGGCGAGTACTTCACAAATTTGTTGCCTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAAACAGTTATTCCAATGCACCTATCTTCCATGTGGCTGATCAACAAATTTCTGTGGTTGACAACGGGTCCAAAAAGGAGCAAGTTTCCCAGGAGTATGCTTCAACGTCAACCTCCAGTTGCCAGATTGACCTGTGGAAGTGA 1083 0.4303 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPEEGWVVCRVFKKKMATMQKVGEYDQSPCWYDDQVSFMQDLESPRRISQPYASYHQHQPCKPELMELQYNIPHDAFLQLPQLESPKVTQSAASLSCSSVVPYGYENNNNGSTLQFSSLTQEEQIQYFHQQNNNHSLYGSNDHAVDQVTDWRVLHKFVASQLSHNNQDVSKENSYSNAPIFHVADQQISVVDNGSKKEQVSQEYASTSTSSCQIDLWK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01641 360 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Cca11g01641 360 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Cca11g01641 360 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Cca11g01641 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 349 - -
Cca11g01641 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 349 - -
Cca11g01641 360 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01641 Cca-Chr11 40398455 40404278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01641 1 360 NAC Transcription Factor Family AT1G12260 57.692 1.70e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g01641 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01641 - - gmx:100783529 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01641 11 40398455 40404278 Cca11g01641 11 40398455 40404278 ECH