Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01640 ATGTCATCCTCTTCCACCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACTGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCGTCTCATAACCTTCTGGAGGAGATACCAAACCCTTCTCCAAATTTTCTTATGAACCAACAAACAAATTTAAGTGCAACAAATGAGTTCTCTATGCCTGCTAGGACTGTAGCTGATGAGCTTCCACGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCATACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCATTTCCCACATATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 651 0.4747 MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQQTNLSATNEFSMPARTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01640 216 Pfam YABBY protein 15 180 IPR006780 GO:0007275
Cca11g01640 216 SUPERFAMILY HMG-box 124 173 IPR036910 -
Cca11g01640 216 PANTHER PROTEIN YABBY 4 1 214 - -
Cca11g01640 216 Gene3D High mobility group box domain 125 188 IPR036910 -
Cca11g01640 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01640 Cca-Chr11 40332431 40335680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01640 26 214 C2C2-YABBY Transcription Factor Family AT4G00180 60.287 5.84e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca11g01640 YABBY 1e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01640 K25796 - gmx:100798441 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01640 11 40332431 40335680 Cca11g01640 11 40332431 40335680 ECH