Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01636 ATGGATATGAAGTCCTCTCATGCTTCTCTTCTCACTGACCCTGTTCCCGTAAACAAGTCAAGGCTTCGAATGCATTCTAGTTTGCTCGGTTATTCCCAACAAGATTCACCACTCTCTCCTGGGAAGTGCTCAAGAAGCAATTCAAGGAAAAGTACTGGGAGTGTCGATGATGTAAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCGCCTCCAAGGAAGAAGCTACTTAAGGGGTCGAGTGCTCAGGTCGCCTCAATTGACTTTGACATTGAAGACTACTTTTCATGGATGCTTGAATATCCTTCAGCGCTAGACTCTTTTGAGAAAATCATTGACCTTGCAAAGAATAAGAAGATTGCAATGTTTCTTGATTATGATGGCACGCTTTCACCAATAGTAGATGATCCGGATTGCGCCTTTATGTCTGAATCTATGCGCACAACTGTGAGAAGTGTGGCAAAATATTTCCCCACAGCAATTATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCCGGTAGTCATGGGATGGACATTATTGGCCCTATTAGCAGTACTTTGTGCAAAAGTCACCCAGATTGTGTTAAGTCTACTGACCAAGAGGGAAATGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGCTTCTGTACATTACCGTAATGTAGAAGAGACTAATTGGACAACGATTGGACAACGTGTCCATGATGTTTTGAAAGATTACCCTCGCTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTCCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAACTGATAGCAATGATGTGCTTCCCCTATACATCGGAGATGATACAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAACCATGGTTATGGGATTTTGGTTTCGTCGGTTAGGAAAGAAAGCAATGCCTTTTTCTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAATTGGAAGAGACAAGAAAGAAAGCATGGGAAGAAGTAA 1173 0.4203 MDMKSSHASLLTDPVPVNKSRLRMHSSLLGYSQQDSPLSPGKCSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSAQVASIDFDIEDYFSWMLEYPSALDSFEKIIDLAKNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPISSTLCKSHPDCVKSTDQEGNEITLFQPAREFLPMIDEVFRTLVEITKDIEGAKVENHKFCASVHYRNVEETNWTTIGQRVHDVLKDYPRLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLTDSNDVLPLYIGDDTTDEDAFKVLRESNHGYGILVSSVRKESNAFFSLRDPNEVMKFLQLLVNWKRQERKHGKK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01636 390 Pfam Trehalose-phosphatase 124 367 IPR003337 GO:0003824|GO:0005992
Cca11g01636 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 6 387 IPR044651 GO:0004805|GO:0005992
Cca11g01636 390 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 342 IPR006379 -
Cca11g01636 390 MobiDBLite consensus disorder prediction 30 58 - -
Cca11g01636 390 Gene3D - 121 205 IPR023214 -
Cca11g01636 390 Gene3D - 221 390 IPR023214 -
Cca11g01636 390 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 6 387 - -
Cca11g01636 390 TIGRFAM T6PP: trehalose-phosphatase 119 378 IPR003337 GO:0003824|GO:0005992
Cca11g01636 390 CDD HAD_TPP 122 372 - -
Cca11g01636 390 SUPERFAMILY HAD-like 122 382 IPR036412 -
Cca11g01636 390 MobiDBLite consensus disorder prediction 30 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01636 Cca-Chr11 40258024 40264280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01636 108 377 Trehalose Biosynthesis Gene Families AT1G70290 26.298 1.87e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01636 K01087 - jre:109011403 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01636 11 40258024 40264280 Cca11g01636 11 40258024 40264280 ECH