Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01609 ATGTCATTCAAATTTCAAACACAATCTTGTTCTCCCATGATTTCTGTGTTCCCCAAAACCCTAATTGCCACTCGTTTCCTTTCCCGAACTCCAACACTTCCTCCCAAACTAAACGCCATTAGAACCATGAGCTCCTCCACCCAGCGCGTCTTCCAGCTCAAGCTTGACCTACTTACCGGTAACTCCGAATGGGTCGTCATCGAAGACAACGACAACGACAACGACCACGAAAGCTTCTCCCAGAATTTCCACCAACCCCTTCTCGCCACCACGTCCTATCTCGACATGCTCAACGACTCAACCCGAAACGCAGCGTTTCGCCAAGCCATCGAAAAAACCATCACTAAACCTTGCCATGTTCTCGATATTGGCGCTGGAACCGGGTTGCTTTCGATGATGGCGGCACGTGCCATGGGTGAGGAAGGGAGGGTCACGGCGTGTGAGTCTTACCTTCCCATGGTGAAGCTGATGAAGAAGGTGTTGCGCCTTAATGCCATGGAGGGAAGAGTCAGAGTCATCAACAAGCGCTCTGATGAACTCCAAGTTGGTCTTGATATCCCTGCACGTGCACATGTTCTTGTAAGCGAGATACTTGATTCAGAGCTACTGGGTGAGGGGCTAATACCGACTCTACAACATGCGCATGACAATTTGTTGGTAGAAAATGCACTGACTGTGCCATATCGAGCAACTACATATGGTCAGCTGGTTGAAAGCACATTCTTATGGCAGCTGCATGATTTGCATAACAATGAACCTACTGTATCTGATGGCATTCATCTTACTCCTCCCGGGCTTGGTAAAGTGTTAAGCGTCAAACGTCAGCAATATGCCATGCATTGTGATCCTATAAGAGAGGAAATAAAACTGCTTTCAGAACCGTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTCATGGAGAAACTGAGCTGTGCGTAAAGGCAACTAATGATGGGAGAGTTCATGCTGTGGTCTCCTGGTGGGTACTACAACTTGATCAAGAAGGGACCATCTATTATTCCACTGCTCCTAGGTGGATAAGCTCACCAAAAACTACAAGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGCAGTGGTATTTCCACACTCAAAGGGGAAGAAATACATTTGCATGCTACTCATACTGAAACTAGTATCTCATATAGTTTAGATACCCAAGTACCAGCAACTGAGATTTTGAACCATAGGTGGACGACTGGAGATTTGCAGCTTGTTCTGCCACCAGAAAGGGCTGCAATATATGGAGACAAAGGATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCAAGTTGCAGGGAAGAGGTTGCCCGTTATGCTTGGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACAATTTTCAGAGGCACCACATGTAATGTCATTACTTCCGGGGCTGAAGGAAAGGGGCCTCCAATATTTGCAAGCTGCAGCCCATGCAAACGGTTTGGCACGTAACTGCATAGAAGTTCTTGAAAAAGGAGTGAAACAGTTAACCATGCATGATTTACACCAGAAAAAGGTTGATCTGTTAATAGCAGAACCTTTCTATGTAGGACATGACGGTATGCTTCCATGGCAGAACCTGCGATTTTGGAGGGATCGTACTACACTTGATGATATCCTCTCTGACGATGCTATGATTATTCCTAGTAAAGGAATATTGAGAGCTTGTGCCGTCTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCTTGACTAAGATTGAAGGTTTTGACCACTCAGTGGTAAATGCTACCTTGGGGGCCTGTGGTCATCTACCTGAATCGGAAGAGGGTCCTTGTCTGCCTTTTTTTGTCTGGCAGTGTGGAGAATTTAATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATATGCCAATGTCAAGGAAAATCCCAGGTTCAATTCACCAAGAGTGGGGTGTGTCATGGGTTTGTGCTATGGATTGACTGGGTAATGGATTTGCAAAATTCAGTTGTGATATCAACTGGTCCAGATAGGAGATATTGGAAGCAAGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCCCAAAGACTGAGTAATGTCCAAACATGTTCTGCAGTTCTCGAAGCATTTTTTAATCCATTAAATGGGGAACTCAAAATAGCACACGATTTCTTATGA 2223 0.4476 MSFKFQTQSCSPMISVFPKTLIATRFLSRTPTLPPKLNAIRTMSSSTQRVFQLKLDLLTGNSEWVVIEDNDNDNDHESFSQNFHQPLLATTSYLDMLNDSTRNAAFRQAIEKTITKPCHVLDIGAGTGLLSMMAARAMGEEGRVTACESYLPMVKLMKKVLRLNAMEGRVRVINKRSDELQVGLDIPARAHVLVSEILDSELLGEGLIPTLQHAHDNLLVENALTVPYRATTYGQLVESTFLWQLHDLHNNEPTVSDGIHLTPPGLGKVLSVKRQQYAMHCDPIREEIKLLSEPFKIFEFDFWKRPESHGETELCVKATNDGRVHAVVSWWVLQLDQEGTIYYSTAPRWISSPKTTSPVDWCDHWKQCVWFVPGSGISTLKGEEIHLHATHTETSISYSLDTQVPATEILNHRWTTGDLQLVLPPERAAIYGDKGWRLSMLKAVQSKLQGRGCPLCLVADDSVFLPLLVAQFSEAPHVMSLLPGLKERGLQYLQAAAHANGLARNCIEVLEKGVKQLTMHDLHQKKVDLLIAEPFYVGHDGMLPWQNLRFWRDRTTLDDILSDDAMIIPSKGILRACAVSLPDLWKSRCCLTKIEGFDHSVVNATLGACGHLPESEEGPCLPFFVWQCGEFNVLSETFDVMEFDFSKQICQCQGKSQVQFTKSGVCHGFVLWIDWVMDLQNSVVISTGPDRRYWKQGVKLLGTPRTVGPQRLSNVQTCSAVLEAFFNPLNGELKIAHDFL 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01609 740 PIRSF Arg_N-mtase 48 738 IPR014644 GO:0006479|GO:0008168
Cca11g01609 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 93 398 IPR029063 -
Cca11g01609 740 CDD AdoMet_MTases 120 195 - -
Cca11g01609 740 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 51 681 - -
Cca11g01609 740 Gene3D - 573 739 - -
Cca11g01609 740 Gene3D Vaccinia Virus protein VP39 86 228 IPR029063 -
Cca11g01609 740 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 72 401 IPR025799 GO:0016274|GO:0018216
Cca11g01609 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 490 709 IPR029063 -
Cca11g01609 740 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 104 173 - -
Cca11g01609 740 Gene3D Vaccinia Virus protein VP39 420 569 IPR029063 -
Cca11g01609 740 Gene3D - 229 413 - -
Cca11g01609 740 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 403 740 IPR025799 GO:0016274|GO:0018216
Cca11g01609 740 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 51 681 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01609 Cca-Chr11 39835489 39842022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01609 80 233 C2H2 Transcription Factor Family AT3G12270 30.061 1.51e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01609 K11438 - gmx:100785846 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01609 11 39835489 39842022 Cca11g01609 11 39835489 39842022 ECH