Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01606 aTGACTttctttacttgcttctttttcttccttcttgcttcatcAGCCACTGCTTGTGATCGCTGCCTTCAACAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGGCTTAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCCGGTTGTGGTGCCTGCTTTCAGATACGATGCAAGAATCCAACTGTGTGCAGCAAAGAAGGCACCAGAGTGGTGTTGACTGATCTCAATCACAATAATAAAACTGACTTTGTGCTCAGCAGTAGAGGGTTGCGAGGGTCTCTCCTGCTGGTTGGGATGGTTGCGAGGGTTTTCTCCTGCTGTAAACGACGATTTGTTGGGGGATAG 408 0.451 MTFFTCFFFFLLASSATACDRCLQQSKASYFSKASALSSGACGYGSLALGLSGGHLAAGVASLFKDGAGCGACFQIRCKNPTVCSKEGTRVVLTDLNHNNKTDFVLSSRGLRGSLLLVGMVARVFSCCKRRFVGG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01606 135 PANTHER EXPANSIN-LIKE A1-RELATED 5 110 - -
Cca11g01606 135 PANTHER EXPANSIN-B3 5 110 - -
Cca11g01606 135 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 135 IPR007112 -
Cca11g01606 135 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cca11g01606 135 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cca11g01606 135 SUPERFAMILY Barwin-like endoglucanases 8 108 IPR036908 -
Cca11g01606 135 Pfam Lytic transglycolase 57 108 IPR009009 -
Cca11g01606 135 Gene3D - 12 112 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01606 Cca-Chr11 39818159 39820420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01606 3 112 Expansin Gene Family AT3G45960 60.909 1.48e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01606 - - ccaj:109807017 215.698