Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01602 ATGGCTCCTCTCTTTGTCTCGCTGCAAATGCAAATGCTTTTGGTTTCCACTTTCATATTGCTATTGCATGTAACAACCGTGACATGCAGAAACTCCTCCAAGTGGGTCGGACCCATCGGGCACCGTTTAATCACCGTTGACATTAACGGCGGTGCCCATTTCCGGTCGGTCCAAGCCGCCGTCAATGCTGTCACGGAGAACAACAGAATGAATGTCCTTATTCAAATCAACGCCGGCTATTACATAGAGAAGGTGGTGGTGCCCGTGACGAAGCCGTACATTAGATTTGAAGGCGCGGGAAGAGATGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGCCCCAACGGCCAACAACTTCGTACTTATAGAACAGCATCTGTCACTGTTTTTGCCAACTACTTCTCTGCCACAAATATCAGCTTCAAGAACACAGCGCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGGGACAAAGCATATTTCTCCGGCTGCGGGTTCTACGGCGCACAAGACACTCTTTGCGACGACGCTGGCCGACATTATTTCAAAGAATGCTACATCGAGGGCTCCATTGATTTCATTTTCGGGAATGGCAGGTCCATGTACAAGGATTGCGAGCTACACTCAATTGCAACGAGGTTCGGGTCAATAGCAGCCCAAGCTAGGAATTCCCCATACGAGAAGACGGGCTTCGCATTTGTACGGTGCAAAGTGACAGGAACAGGCCCAGTTTACGTAGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTATGCCTACACCTATTTCGACGACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTGCCAACAACAGTAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGAGCAGCGGCTATACGTAGGGGCTCTTTGGCCCAAGAGCTAGATTTCGAATCGGCCCATCAATTCCTGGCAAAGAGTTTTGTCAATGGGAGGCATTGGATTGCACCCGCTGATGCTTCGCTAAATGCTACTCCACAGTAA 1059 0.509 MAPLFVSLQMQMLLVSTFILLLHVTTVTCRNSSKWVGPIGHRLITVDINGGAHFRSVQAAVNAVTENNRMNVLIQINAGYYIEKVVVPVTKPYIRFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSATNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQARNSPYEKTGFAFVRCKVTGTGPVYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWNTANNSNKTVFFGVYKCWGPGAAAIRRGSLAQELDFESAHQFLAKSFVNGRHWIAPADASLNATPQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01602 352 Gene3D - 42 349 IPR012334 -
Cca11g01602 352 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Cca11g01602 352 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 27 344 - -
Cca11g01602 352 Pfam Pectinesterase 44 336 IPR000070 GO:0030599|GO:0042545
Cca11g01602 352 SUPERFAMILY Pectin lyase-like 41 343 IPR011050 -
Cca11g01602 352 PANTHER PECTINESTERASE 68-RELATED 27 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01602 Cca-Chr11 39777010 39780623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01602 12 345 Carbohydrate Esterase AT5G47500 72.832 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01602 - - gmx:100796327 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01602 11 39777010 39780623 Cca11g01602 11 39777010 39780623 ECH
Cca06g01695 06 32211483 32215301 Cca11g01602 11 39777010 39780623 PCT