Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01598 ATGATGGAAAGACAGAAATGCAAGCTCTGTTCAAGGTCCTTCAGCAATGGCAGAGCCCTCGGTGGGCACATGAAGGCTCACCTCGCCGACACTAGTTCCTCCTCTTACTCCTCTGACTCCGACGCCTTGAGGGAGAACCCCAAGAAAAGCTTCAACTCTCCGTTTGCCTCTCTTGTCCAAGACAGAGAGAGCGAGAGCGAATCAAAGAACCCCACTCGCCAACGATCCAACCGCTCCTCCGAGGAACATGTCGCCATGTGCCTCATCATGCTCTCCAGAGACACGTGGCATGCGCCTCCTCCTAACACCTCCCGCACCGGATCAAACCACCTCTGCCTCCGCTGCAACAAACCCTTCCGCTCCTCTCGCGCCTTGGCCTCTCACTCAACCATTTGCAAAAACACTCATCACCAAACTCATACTAAGCTTTTTCAATGCCCCTTTTGTTACAAGCTCTTTGCCTCCGGTCAAGCCCTTGGTGGCCACAAGAGATCTCACCTTATTCCATCTTCAACTCATTCCGTTAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCCGCGCCGCCTGAAGAAGACAACCTTAGCCTTCTCTCTCATGCCTAG 606 0.5264 MMERQKCKLCSRSFSNGRALGGHMKAHLADTSSSSYSSDSDALRENPKKSFNSPFASLVQDRESESESKNPTRQRSNRSSEEHVAMCLIMLSRDTWHAPPPNTSRTGSNHLCLRCNKPFRSSRALASHSTICKNTHHQTHTKLFQCPFCYKLFASGQALGGHKRSHLIPSSTHSVKLKQSFIDLNLPAPPEEDNLSLLSHA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01598 201 Pfam C2H2-type zinc finger 6 28 - -
Cca11g01598 201 Pfam C2H2-type zinc finger 144 167 - -
Cca11g01598 201 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Cca11g01598 201 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 79 - -
Cca11g01598 201 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 76 201 - -
Cca11g01598 201 MobiDBLite consensus disorder prediction 28 81 - -
Cca11g01598 201 Gene3D Classic Zinc Finger 92 167 - -
Cca11g01598 201 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 79 IPR044303 GO:0006355
Cca11g01598 201 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 76 201 IPR044303 GO:0006355
Cca11g01598 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Cca11g01598 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Cca11g01598 201 MobiDBLite consensus disorder prediction 62 80 - -
Cca11g01598 201 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Cca11g01598 201 SUPERFAMILY beta-beta-alpha zinc fingers 140 167 IPR036236 -
Cca11g01598 201 SMART c2h2final6 110 136 IPR013087 -
Cca11g01598 201 SMART c2h2final6 5 27 IPR013087 -
Cca11g01598 201 SMART c2h2final6 144 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01598 Cca-Chr11 39727549 39728925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01598 2 198 C2H2 Transcription Factor Family AT3G60580 32.639 2.11e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g01598 zf-C2H2_6 3.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01598 - - ccaj:109808923 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01692 06 32183158 32184408 Cca11g01598 11 39727549 39728925 PCT