Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01597 ATGGCCTATATGTCCTCTCTTTTTCATTTTCATTTTGTGGGAACAATTCATATTATTATCATGAATGGAGGAATAACCATGCAAGATTTAGTTATCATTGGAGGCTTGATTGCCTTGCAATCTGTTTACGCTGGGAATGCTGTGTTTCTCAGTTATCTTATGTCTTTGGGCCTTGAATCTCTTACCATTGTCATTTTTACTTCCTTTGCTACCTTCCTTCTCCTCCTCCCCCTTGCCTTCTATTTTGAAAGGTGTAAATGGCCCACCAAAGTTACTTTCAAGTTGTTTTTACAGTTTCTCTTGCTTTCCTTTGGAGGGGTAACATTGTTCCAGTCTCTACTCCTTAAAGGAATCAGTCTAACCTCACCAGCAATGGGAACTGCCATGCCAAACCTTGCACCAGCTCTTATCTTCATCATCGCATGGATTTTTCGGTTGGAAAAAGTGAAATTAAGCTGCACATATAGTAGAGTGAAAATCGTTGGCACATTGCTTTGTGTCTTAGGGGCTCTCACAATGAGCATAATGCAAAGCATCTCTAAACCTCCGTCCGCTAAAGAGGGAACAATTCAAGTGTCATCTCCATCACCCAATGTAACGTTTGACAAAGACAAGTTAATCGGTTGTCTCTATCTTTTGGCTGCAATCCTCATATTGTCAAGCAACATTGTCTTACAGGCCTTTACTCTAGCAGATTTTCCTGCACCCATGTCCTTGTGTGCATTAACTTCCTTTTTAGGAACGTTCATGACTGCCGCAGTTCAAGTAGTTGAAGATCACGAATTCAAAACTGGATGGCCATTTGTTAGTGTTAGAGACATGATTGGCTATTCTCTTCTGGCAGGTACAGTGAGTGGAATATGCTTGAGCTTCAATTGTTGGGCTCTTGAGAAGAGAGGCCCAGTGCTGGTTTCCATGTTCAGCCCCATTGCCACAGTCTGCTCTGTCATTTTCTCGGTTGTTACTTTAGGACAGACCATTAGTATTGGAAGCTTTGCGGGTATGCTACTCATGTTTGTTGGGCTCTACTTTGTGCTTTGGGCCAAAGGTAAAGAAGACCATGCATATGGAGGTGGTTTAGAGAATGAGTGTGATGCAGAGAAGCCTCTCTTAAGTTGA 1119 0.4209 MAYMSSLFHFHFVGTIHIIIMNGGITMQDLVIIGGLIALQSVYAGNAVFLSYLMSLGLESLTIVIFTSFATFLLLLPLAFYFERCKWPTKVTFKLFLQFLLLSFGGVTLFQSLLLKGISLTSPAMGTAMPNLAPALIFIIAWIFRLEKVKLSCTYSRVKIVGTLLCVLGALTMSIMQSISKPPSAKEGTIQVSSPSPNVTFDKDKLIGCLYLLAAILILSSNIVLQAFTLADFPAPMSLCALTSFLGTFMTAAVQVVEDHEFKTGWPFVSVRDMIGYSLLAGTVSGICLSFNCWALEKRGPVLVSMFSPIATVCSVIFSVVTLGQTISIGSFAGMLLMFVGLYFVLWAKGKEDHAYGGGLENECDAEKPLLS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01597 372 PANTHER OS11G0588100 PROTEIN 29 372 - -
Cca11g01597 372 Pfam EamA-like transporter family 207 346 IPR000620 GO:0016020|GO:0016021
Cca11g01597 372 Pfam EamA-like transporter family 42 174 IPR000620 GO:0016020|GO:0016021
Cca11g01597 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 270 352 - -
Cca11g01597 372 PANTHER WAT1-RELATED PROTEIN 29 372 IPR030184 GO:0016021|GO:0022857
Cca11g01597 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 72 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01597 Cca-Chr11 39706565 39709843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01597 27 352 Nodulin-like Gene Family AT5G47470 57.187 1.00e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01597 - - gmx:100809182 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01691 06 32166819 32170771 Cca11g01597 11 39706565 39709843 PCT