Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01589 ATGCGATTCTTGCAGCGTGTGAGGTGCTGGGAGTACCGCCAGCAACCTTCTATTGTTCGTTTGACAAGGCCAACTCGCCCAGACAAGGCTCGCCGCCTGGGTTACAAGGCTAAACAGGGTTATGTGGTTTACCGTGTTCGTGTTCGGAGGGGTGGCAGGAAGAGGCCAGTTCCAAAAGGTATTGTTTATGGTAAGCCAACCAACCAGGGTGTTACTCAATTGAAATTTCAGAGGAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGAAGGAAGTTGGGTGGCCTCAGGGTCCTCAATTCGTACTGGGTGAATGAGGACTCGACCTACAAATATTTTGAGGTCATTCTGGTGGACGTTGCCCACAGTGCTATAAGAAATGATCCAAGGATCAACTGGCTCGTCAATCCAGTCCACAAACACAGGGAACTTCGTGGCCTCACTTCTGCTGGGAAAAGTAACAGGGGTTTACGTGGCAGAGGACATCTGTACCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCCCTTCGTCGTTACCGCTGA 561 0.5116 MRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAIRNDPRINWLVNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01589 186 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 177 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cca11g01589 186 MobiDBLite consensus disorder prediction 157 171 - -
Cca11g01589 186 PANTHER RIBOSOMAL PROTEIN L15 1 186 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca11g01589 186 Gene3D Ribosomal protein l15e 1 186 IPR024794 GO:0003735|GO:0005840
Cca11g01589 186 MobiDBLite consensus disorder prediction 146 171 - -
Cca11g01589 186 Pfam Ribosomal L15 1 172 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca11g01589 186 SMART Ribosomal_L15e_2 1 175 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca11g01589 186 PANTHER RIBOSOMAL PROTEIN L15 1 186 - -
Cca11g01589 186 ProSitePatterns Ribosomal protein L15e signature. 28 51 IPR020925 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01589 Cca-Chr11 39612491 39615155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01589 1 186 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.323 1.49e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01589 K02877 - gmx:100306052 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01677 06 32043484 32045740 Cca11g01589 11 39612491 39615155 PCT