Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01584 ATGGCTCCGAGGAACGATGGAGCAGGCAAGAGAGGAATGAACAGAGGAGCATGGACCTCAGAGGAAGACCGAAAGCTAGCCCAATGCATTCAAACTCATGGTGCCAAAAAGTGGAAGGCTCTTGCACTTAAATCAGGTTTAAATAGATGTGGCAAGAGTTGCAGGCTGAGATGGTTGAACTATCTCAGACCCAATATCAAGAGGGGAAACATTTCAGATGAAGAAGAGGATTTGATTCTCAGACTCCACAAACTTCTCGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGAGGAGAAACCAGAATCTTCAACAACGCAAGAAATTATTGGGCAGAATGAGAATGCAACGTTAGAGAAGGAGGTTGCAGTTAATGAAAGTGGTAACATAGATGTTAACTTTGACGTGGACGAGTTCTTCAACTTCTCCTCTGAGGAAACCAATGGCTTTGATTGGCTCAACAAATACCTAGAACTGGACCATATTCCTGATCCTGAGACTACAAAAAATCTCTGA 585 0.4256 MAPRNDGAGKRGMNRGAWTSEEDRKLAQCIQTHGAKKWKALALKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEEKPESSTTQEIIGQNENATLEKEVAVNESGNIDVNFDVDEFFNFSSEETNGFDWLNKYLELDHIPDPETTKNL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01584 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Cca11g01584 194 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 186 - -
Cca11g01584 194 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca11g01584 194 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca11g01584 194 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Cca11g01584 194 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Cca11g01584 194 CDD SANT 72 113 IPR001005 -
Cca11g01584 194 Gene3D - 72 144 - -
Cca11g01584 194 Gene3D - 15 67 - -
Cca11g01584 194 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca11g01584 194 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 3 186 - -
Cca11g01584 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca11g01584 194 SMART sant 14 64 IPR001005 -
Cca11g01584 194 SMART sant 67 115 IPR001005 -
Cca11g01584 194 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01584 Cca-Chr11 39512102 39514504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01584 10 146 MYB Transcription Factor Family AT3G13540 58.394 4.58e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01584 Myb_DNA-binding 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01584 K09422 - gmx:100799575 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01676 06 32035852 32037166 Cca11g01584 11 39512102 39514504 PCT