Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01581 ATGGACATGGAACAATCTAACCCTCTAGAAAGTGAAGTGCAACCAACTACCTCATCATCATCCTCTATCACCATTACTTGCTCCAATGAAGAAGCCACTaaggaaaagaagaagaaaaagaagagagggaataatgaagGGAAACACCCTACGTATAGAGGAGTGCGCATGCGTCAATGGGGCAAATGGGTATCCGAAATCAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGAACTTTTCCCACGCCGGATATGGCGGCTCGAGCCCACGAC 276 0.413 MDMEQSNPLESEVQPTTSSSSSITITCSNEEATKEKKKKKKRGNNEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHD 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01581 92 ProSiteProfiles AP2/ERF domain profile. 51 92 IPR001471 GO:0003700|GO:0006355
Cca11g01581 92 SUPERFAMILY DNA-binding domain 51 92 IPR016177 GO:0003677
Cca11g01581 92 Gene3D AP2/ERF domain 51 92 IPR036955 GO:0003700|GO:0006355
Cca11g01581 92 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Cca11g01581 92 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Cca11g01581 92 Pfam AP2 domain 50 92 IPR001471 GO:0003700|GO:0006355
Cca11g01581 92 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 12 92 - -
Cca11g01581 92 SMART rav1_2 51 92 IPR001471 GO:0003700|GO:0006355
Cca11g01581 92 MobiDBLite consensus disorder prediction 1 54 - -
Cca11g01581 92 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 92 - -
Cca11g01581 92 MobiDBLite consensus disorder prediction 1 29 - -
Cca11g01581 92 CDD AP2 52 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01581 Cca-Chr11 39403371 39403646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01581 26 92 AP2-EREBP Transcription Factor Family AT5G11590 73.134 6.98e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g01581 AP2 4.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01581 - K09286 gmx:100101914 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01673 06 32021418 32022014 Cca11g01581 11 39403371 39403646 PCT