Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01579 ATGGATAGTGTTGTGTCGTTGGGCGTCTCTCTTTCTCTCCCATCTGCGAAAGCCGAGGGAGACCAaaccaaaacaaaaacatcatacataacccaacacaccacaacacaacacaacacCGTAGGAGTACCAATTTCATGTCTCGGATCCCGTGATTCGGATCCCCAAGACCCGTCTTCACAAACAACCTCGTACCCTATTTTCGTTGGATCCAGCGCCATGACCCGGCGATGCTCGCATTGCAGCCACAATGGACACAACTCCAGGACCTGCCCCAACCGCGGGGTTAAGATATTCGGAGTCCGATTAACCGATGGCTCCATTCGGAAGAGTGCTAGCATGGGTAATCTCACCCACTACGCCGGTTCCGGGTCGGGGCCACTCCATGCCGGGTCAAATAACCCGGGTTCTCCCGGCGAAACCCCCGATCACGCCGCCGCAGCTGATGGTTACGCCTCCGAGGACTTTGTTCCCGGCTCTTCTTCTAGCTCCAGGGAGAGAAAGAAGGGTGTTCCATGGACTGAAGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGCGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTTGCGAGTCACGCACAGAAATATTTCATCAGGCAAAGCAATGTGTCCAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCCGCCGACACTCCAATGGTACAGCAAGACTTCTTGTCAGCTAATCAGATACAGACTGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTCCCCTTGACGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGAGAGCCTGCCCCATCAAAGCCTGAAAATACACAATCATCTTATCCAGTGTTATATCCTGCATATTATTCTCCAGTGTTCCCGTTTCCTCTGCCCTATTGGTCAGGATACAGTCCAGAACCCACCAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATACTAAAAATCCAATCAATGTTGATGAACTGGTTGGCATATCAAAACTGAGTCTAGGGGAGTCTATTGGTGACTCTGGCCCCTCATCTCTGTCTCTAAAACTTCTTGAAGAAGGACCCTCTAGACAGTCGGCTTTTCACGCAACACCGACACCAACGTGTGGCAGTTCAAATATGAATGGCAGTGCCATCCATGCAGTTTAA 1227 0.4784 MDSVVSLGVSLSLPSAKAEGDQTKTKTSYITQHTTTQHNTVGVPISCLGSRDSDPQDPSSQTTSYPIFVGSSAMTRRCSHCSHNGHNSRTCPNRGVKIFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAADTPMVQQDFLSANQIQTETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSYPVLYPAYYSPVFPFPLPYWSGYSPEPTKKETHEVLKPTAVHTKNPINVDELVGISKLSLGESIGDSGPSSLSLKLLEEGPSRQSAFHATPTPTCGSSNMNGSAIHAV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01579 408 MobiDBLite consensus disorder prediction 385 408 - -
Cca11g01579 408 MobiDBLite consensus disorder prediction 42 65 - -
Cca11g01579 408 MobiDBLite consensus disorder prediction 259 298 - -
Cca11g01579 408 SUPERFAMILY Homeodomain-like 167 222 IPR009057 -
Cca11g01579 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 220 IPR006447 GO:0003677
Cca11g01579 408 PANTHER TRANSCRIPTION FACTOR KUA1 74 404 - -
Cca11g01579 408 MobiDBLite consensus disorder prediction 282 298 - -
Cca11g01579 408 Gene3D - 171 223 - -
Cca11g01579 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 221 IPR017930 -
Cca11g01579 408 ProSiteProfiles Myb-like domain profile. 165 217 IPR001005 -
Cca11g01579 408 Pfam Myb-like DNA-binding domain 172 217 IPR001005 -
Cca11g01579 408 ProSiteProfiles SANT domain profile. 173 221 IPR017884 -
Cca11g01579 408 MobiDBLite consensus disorder prediction 384 408 - -
Cca11g01579 408 PANTHER BNAC01G21010D PROTEIN 74 404 - -
Cca11g01579 408 SMART sant 169 219 IPR001005 -
Cca11g01579 408 CDD SANT 172 217 IPR001005 -
Cca11g01579 408 MobiDBLite consensus disorder prediction 118 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01579 Cca-Chr11 39373410 39378960 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g01579 Myb_DNA-binding 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01579 - - ccaj:109807943 811.216