Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01571 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTTCCCCTCAATACCCCAAATCCTCAACATCTCACTCTCATGTCCTCCTCTACTCACTCCTCTTCTCCTTCTGCTTGCAATCCTCACAAACCCTCTTGGAATGAAGCTTTCGCTTCTTCGGATCGAAACTCGGAAACATGCAGAGGCGAAACGCGGTCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCCAGCGTAGAGTGCGAGGAGGAAGCAGGAGTTTCGTCTCCAAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGAGGGAACCCAACGGCGAAGAACACGCATGTTCCCGAGGAATCAGCGACGAAGAAGACGCTGAAACCTCAAGGAAAAAACTCAGACTCTCCAAAGACCAATCGGCTATTCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAGTTGGCACTGGCAAAGCAACTAGGCCTTCGACCAAGGCAAGTGGAGGTGTGGTTCCAAAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTAAGAGCACTCAAACTTTCCCCTCAGTTCTACATGCAAATGACTCCACCCACCACCCTCACTATGTGCCCTTCTTGCGAGCGTGTAGCGGTTCCCTCCTCCGCCGTCGATGCTGCCACGCGTCATCATcccatggcccaggcgcctcggcccatgcccatcggcccgtggGCTTCCGCGGCCCCCGTCCCGCACCGGCCGTTTGATGCTTTCCACCACTGA 867 0.4994 MMVQKEDLGLSLSLNFPLNTPNPQHLTLMSSSTHSSSPSACNPHKPSWNEAFASSDRNSETCRGETRSFLRGIDVNRLPSSVECEEEAGVSSPNSTVSSVSGKRSEREPNGEEHACSRGISDEEDAETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAPRPMPIGPWASAAPVPHRPFDAFHH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01571 288 PANTHER - 4 280 - -
Cca11g01571 288 Coils Coil 185 222 - -
Cca11g01571 288 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Cca11g01571 288 CDD homeodomain 130 187 IPR001356 GO:0003677
Cca11g01571 288 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Cca11g01571 288 PRINTS Lambda-repressor HTH signature 157 166 IPR000047 GO:0003677
Cca11g01571 288 PRINTS Lambda-repressor HTH signature 166 182 IPR000047 GO:0003677
Cca11g01571 288 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Cca11g01571 288 Gene3D - 134 184 - -
Cca11g01571 288 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Cca11g01571 288 MobiDBLite consensus disorder prediction 105 130 - -
Cca11g01571 288 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Cca11g01571 288 SMART HOX_1 128 190 IPR001356 GO:0003677
Cca11g01571 288 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Cca11g01571 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 280 - -
Cca11g01571 288 MobiDBLite consensus disorder prediction 83 130 - -
Cca11g01571 288 MobiDBLite consensus disorder prediction 87 104 - -
Cca11g01571 288 SUPERFAMILY Homeodomain-like 121 187 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01571 Cca-Chr11 39258940 39260843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01571 1 286 Homeobox Transcription Factor Family AT4G16780 64.948 3.36e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g01571 HD-ZIP_N 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01571 K09338 - gmx:100813367 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01669 06 31943094 31944143 Cca11g01571 11 39258940 39260843 PCT