Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01568 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTGGTAGAGGGTGGGGGGGAAGGAGGATCGAGGTTTGTGGGTTATGGTGCGAAAAGGGTGCTGGTAGGAGCAGGCGCTCGTGCGCTCTTCTATCCGACCCTTTTTTACAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGACGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTGAAGGAGCTTGGTGTTCGTGGGGTCATTACATTGAATGAGCCATACGAGACTTTGGTTCCAACTACATTGTATTATGCTCATGGAATTGACCATCTGGTGCTTCCTACTAGAGATTACTGTTTTGCTCCTTCATTGCATGACATAAGCCGTGCTGTGGACTTCATACATGAAAATGCATTGTCTGGACGCACTACATATGTCCACTGCAAAGCTGGACGTGGTCGCAGCACGACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGACGCCCAATGCTGCATATGATTATGTGAAATCAATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTTGCAAGCTGTTCAAGATTACTACTACCATCTTATGGTGAGGAGGGCTGTTGTACGTGCTCCCACAGCTAATATATTAGTGAAGGCTTCTGAGGTGGCGGGAGCTTCACGAGATCTTGTGATGTTTGATGACAGTTCTGTGGTGATGGTAACAGAGTCAGATCTAGAAGGTTACGACCCAAGTAGTCAATCAGGAAGCATGGCCAGTGAAATATGGGCAGATTTAAGTGTTGTATACCGTGTACGAGTTGCTGGACAGGCGGCATTGGCAAGAATATCATGCCTTTGGCTGCGATATGGTACTACCAACGACAAGATTTCAAAGGAGAGGGAAAGCAGTGTCTCTATCAGGGCTAATCACTTGGGAGAAATTAGTGTCGATATCCACGTCTACTGA 975 0.4626 MHIEELKGGEVVEGGGEGGSRFVGYGAKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNEPYETLVPTTLYYAHGIDHLVLPTRDYCFAPSLHDISRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMTPNAAYDYVKSIRPRVLLASSQLQAVQDYYYHLMVRRAVVRAPTANILVKASEVAGASRDLVMFDDSSVVMVTESDLEGYDPSSQSGSMASEIWADLSVVYRVRVAGQAALARISCLWLRYGTTNDKISKERESSVSIRANHLGEISVDIHVY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01568 324 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cca11g01568 324 SMART ptp_7 101 212 IPR003595 -
Cca11g01568 324 Pfam Dual specificity phosphatase, catalytic domain 103 199 IPR000340 GO:0008138|GO:0016311
Cca11g01568 324 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Cca11g01568 324 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Cca11g01568 324 Gene3D Protein tyrosine phosphatase superfamily 59 210 IPR029021 -
Cca11g01568 324 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cca11g01568 324 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
Cca11g01568 324 PANTHER - 1 324 - -
Cca11g01568 324 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 324 - -
Cca11g01568 324 CDD PTPMT1 59 201 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01568 Cca-Chr11 39214592 39218641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01568 28 324 Protein tyrosine phosphatase (PTP) family AT2G35680 61.311 8.68e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01568 - - gmx:100790413 563.148